1 PAS_4#1
410-507 aa · 98 aa · 12.6% of protein
Raw token
PAS_4:410:0.000000156:507:110:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS10555
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength776 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS10555Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_c
Protein length776 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage278 / 776 aa (35.8%)Merged over positioned domains only.
Domain description1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa776 aa
Domain-by-domain annotation3 items
2 HisKA#2
525-595 aa · 71 aa · 9.1% of protein
Raw token
HisKA:525:0.00000000725:595:71:643 HATPase_c#3
642-750 aa · 109 aa · 14.0% of protein
Raw token
HATPase_c:642:4.14e-31:750:109:109- Raw architecture: PAS_4:410:0.000000156:507:110:110#HisKA:525:0.00000000725:595:71:64#HATPase_c:642:4.14e-31:750:109:109
- Domain description: 1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000002.1::G00034
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span828443-833127Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_10505RefSeq proteinWP_228105014.1
Context group ID
GCF_020748465::NZ_JAHZMP010000002.1::G00034Context members
K0039_RS10550K0039_RS10555
Partner locus tags
K0039_RS10550K0039_RS10555
Partner old locus tags
K0039_10500K0039_10505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_228105014.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS10555Primary locus identifier stored in the genes table.
Old locus tagK0039_10505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000002.1Sequence record reported by the local genomic context database.
Genomic interval830 797-833 127 nt2 331 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span828 443-833 127 ntGCF_020748465::NZ_JAHZMP010000002.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000002.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span828 443-833 127 nt4 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
828 443 nt833 127 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS10550GCF_020748465#K0039_RS10550
HKClassic
828 443-830 401 nt · Reverse (-)
K0039_RS10555GCF_020748465#K0039_RS10555
HKClassicCurrent focus
830 797-833 127 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS10555The current gene is the representative for this cluster.
PFAM architecturePAS_9 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0605405
Simplified PFAM architecture for HKOC_0605405
PFAM domain coverage: 267 / 776 aa (34.4%)
1 aa776 aa
PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[415-503] | HisKA[525-594] | HATPase_c[643-750]
- Domain count: 3
- Matched identifier: HKOC_0605405
- Positioned domains: PAS_9 415-503 ; HisKA 525-594 ; HATPase_c 643-750
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS10555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key