1 PAS#1
1-80 aa · 80 aa · 10.0% of protein
Raw token
PAS:1:0.00000175:80:81:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS10355
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength798 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020748465#K0039_RS10355Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
PASPAS_9PAS_3HisKAHATPase_c
Protein length798 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage425 / 798 aa (53.3%)Merged over positioned domains only.
Domain description1 PAS,1 PAS_9,1 PAS_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa798 aa
Domain-by-domain annotation5 items
2 PAS_9#2
125-223 aa · 99 aa · 12.4% of protein
Raw token
PAS_9:125:0.00000000261:223:100:1023 PAS_3#3
440-506 aa · 67 aa · 8.4% of protein
Raw token
PAS_3:440:0.00000069:506:74:894 HisKA#4
538-607 aa · 70 aa · 8.8% of protein
Raw token
HisKA:538:0.000000000000569:607:70:645 HATPase_c#5
654-762 aa · 109 aa · 13.7% of protein
Raw token
HATPase_c:654:1.7e-31:762:109:109- Raw architecture: PAS:1:0.00000175:80:81:113#PAS_9:125:0.00000000261:223:100:102#PAS_3:440:0.00000069:506:74:89#HisKA:538:0.000000000000569:607:70:64#HATPase_c:654:1.7e-31:762:109:109
- Domain description: 1 PAS,1 PAS_9,1 PAS_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020748465::NZ_JAHZMP010000002.1::G00033
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span783767-786163Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_10305RefSeq proteinWP_228104976.1
Context group ID
GCF_020748465::NZ_JAHZMP010000002.1::G00033Context members
K0039_RS10355
Partner locus tags
K0039_RS10355
Partner old locus tags
K0039_10305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228104976.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9PYG2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9PYG2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS10355Primary locus identifier stored in the genes table.
Old locus tagK0039_10305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000002.1Sequence record reported by the local genomic context database.
Genomic interval783 767-786 163 nt2 397 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span783 767-786 163 ntGCF_020748465::NZ_JAHZMP010000002.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000002.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span783 767-786 163 nt2 397 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
783 767 nt786 163 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K0039_RS10355GCF_020748465#K0039_RS10355
HKClassicCurrent focus
783 767-786 163 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS10355The current gene is the representative for this cluster.
PFAM architecturePAS + PAS_9 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0560569
Simplified PFAM architecture for HKOC_0560569
PFAM domain coverage: 351 / 798 aa (44.0%)
1 aa798 aa
PASPAS_9HisKAHATPase_c
- Simplified architecture: PAS + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS[1-74] | PAS_9[126-223] | HisKA[538-606] | HATPase_c[654-763]
- Domain count: 4
- Matched identifier: HKOC_0560569
- Positioned domains: PAS 1-74 ; PAS_9 126-223 ; HisKA 538-606 ; HATPase_c 654-763
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS10355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key