1 HisKA#1
193-257 aa · 65 aa · 15.7% of protein
Raw token
HisKA:193:0.00000000000765:257:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS09290
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength413 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS09290Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length413 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 413 aa (42.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa413 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
304-413 aa · 110 aa · 26.6% of protein
Raw token
HATPase_c:304:1.44e-18:413:113:109- Raw architecture: HisKA:193:0.00000000000765:257:65:64#HATPase_c:304:1.44e-18:413:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000002.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span582748-584653Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_09235RefSeq proteinWP_228104774.1
Context group ID
GCF_020748465::NZ_JAHZMP010000002.1::G00032Context members
K0039_RS09285K0039_RS09290
Partner locus tags
K0039_RS09285K0039_RS09290
Partner old locus tags
K0039_09230K0039_09235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_228104774.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS09290Primary locus identifier stored in the genes table.
Old locus tagK0039_09235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000002.1Sequence record reported by the local genomic context database.
Genomic interval583 412-584 653 nt1 242 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span582 748-584 653 ntGCF_020748465::NZ_JAHZMP010000002.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000002.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span582 748-584 653 nt1 906 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
582 748 nt584 653 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS09285GCF_020748465#K0039_RS09285
RROmpR
582 748-583 428 nt · Forward (+)
K0039_RS09290GCF_020748465#K0039_RS09290
HKClassicCurrent focus
583 412-584 653 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS09290The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2331399
Simplified PFAM architecture for HKOC_2331399
PFAM domain coverage: 166 / 413 aa (40.2%)
1 aa413 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[194-257] | HATPase_c[305-406]
- Domain count: 2
- Matched identifier: HKOC_2331399
- Positioned domains: HisKA 194-257 ; HATPase_c 305-406
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS09290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key