1 Response_reg#1
3-111 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:3:7.02e-32:111:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS09100
Response regulator OmpR family
Terrisporobacter mayombei · GCF_020748465
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS09100Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:145:2.86e-23:220:77:77- Raw architecture: Response_reg:3:7.02e-32:111:110:111#Trans_reg_C:145:2.86e-23:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000002.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span549647-551537Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_09040RefSeq proteinWP_228104738.1
Context group ID
GCF_020748465::NZ_JAHZMP010000002.1::G00031Context members
K0039_RS09100K0039_RS09105
Partner locus tags
K0039_RS09100K0039_RS09105
Partner old locus tags
K0039_09040K0039_09045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228104738.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9PYS8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9PYS8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS09100Primary locus identifier stored in the genes table.
Old locus tagK0039_09040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000002.1Sequence record reported by the local genomic context database.
Genomic interval549 647-550 318 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span549 647-551 537 ntGCF_020748465::NZ_JAHZMP010000002.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000002.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span549 647-551 537 nt1 891 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
549 647 nt551 537 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS09100GCF_020748465#K0039_RS09100
RROmpRCurrent focus
549 647-550 318 nt · Forward (+)
K0039_RS09105GCF_020748465#K0039_RS09105
HKClassic
550 308-551 537 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS09100The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1612524
Simplified PFAM architecture for RROC_1612524
PFAM domain coverage: 184 / 223 aa (82.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1612524
- Positioned domains: Response_reg 3-111 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS09100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key