1 Response_reg#1
3-103 aa · 101 aa · 49.0% of protein
Raw token
Response_reg:3:1.06e-26:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS08220
Response regulator NarL family
Terrisporobacter mayombei · GCF_020748465
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS08220Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 206 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-201 aa · 53 aa · 25.7% of protein
Raw token
HTH_LUXR:149:1.96e-21:201:53:58- Raw architecture: Response_reg:3:1.06e-26:103:101:111#HTH_LUXR:149:1.96e-21:201:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000002.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span381155-382860Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_08170RefSeq proteinWP_228104568.1
Context group ID
GCF_020748465::NZ_JAHZMP010000002.1::G00029Context members
K0039_RS08220K0039_RS08225
Partner locus tags
K0039_RS08220K0039_RS08225
Partner old locus tags
K0039_08170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228104568.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9PXD2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9PXD2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS08220Primary locus identifier stored in the genes table.
Old locus tagK0039_08170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000002.1Sequence record reported by the local genomic context database.
Genomic interval381 155-381 775 nt621 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span381 155-382 860 ntGCF_020748465::NZ_JAHZMP010000002.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000002.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span381 155-382 860 nt1 706 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
381 155 nt382 860 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS08220GCF_020748465#K0039_RS08220
RRNarLCurrent focus
381 155-381 775 nt · Reverse (-)
K0039_RS08225GCF_020748465#K0039_RS08225
HKClassic
381 790-382 860 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS08220The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2085835
Simplified PFAM architecture for RROC_2085835
PFAM domain coverage: 155 / 206 aa (75.2%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[149-201]
- Domain count: 2
- Matched identifier: RROC_2085835
- Positioned domains: Response_reg 3-104 ; GerE 149-201
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS08220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key