1 Response_reg#1
6-116 aa · 111 aa · 74.0% of protein
Raw token
Response_reg:6:1.81e-25:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS07935
Response regulator, CheY family
Terrisporobacter mayombei · GCF_020748465
ClassRRTypeCheYLength150 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS07935Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length150 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 150 aa (74.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa150 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:1.81e-25:116:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000002.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span319674-321231Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_07880RefSeq proteinWP_228104513.1
Context group ID
GCF_020748465::NZ_JAHZMP010000002.1::G00026Context members
K0039_RS07930K0039_RS07935
Partner locus tags
K0039_RS07930K0039_RS07935
Partner old locus tags
K0039_07875K0039_07880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228104513.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9PZU3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9PZU3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS07935Primary locus identifier stored in the genes table.
Old locus tagK0039_07880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000002.1Sequence record reported by the local genomic context database.
Genomic interval320 779-321 231 nt453 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span319 674-321 231 ntGCF_020748465::NZ_JAHZMP010000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span319 674-321 231 nt1 558 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
319 674 nt321 231 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS07930GCF_020748465#K0039_RS07930
HKClassic
319 674-320 774 nt · Forward (+)
K0039_RS07935GCF_020748465#K0039_RS07935
RRCheYCurrent focus
320 779-321 231 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS07935The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2228691
Simplified PFAM architecture for RROC_2228691
PFAM domain coverage: 111 / 150 aa (74.0%)
1 aa150 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-115]
- Domain count: 1
- Matched identifier: RROC_2228691
- Positioned domains: Response_reg 5-115
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS07935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key