1 HisKA_3#1
177-244 aa · 68 aa · 18.6% of protein
Raw token
HisKA_3:177:7.19e-17:244:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS07930
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS07930Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage141 / 366 aa (38.5%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
285-357 aa · 73 aa · 19.9% of protein
Raw token
HATPase_c:285:0.00000121:357:94:109- Raw architecture: HisKA_3:177:7.19e-17:244:68:68#HATPase_c:285:0.00000121:357:94:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000002.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span319674-321231Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_07875RefSeq proteinWP_228104512.1
Context group ID
GCF_020748465::NZ_JAHZMP010000002.1::G00026Context members
K0039_RS07930K0039_RS07935
Partner locus tags
K0039_RS07930K0039_RS07935
Partner old locus tags
K0039_07875K0039_07880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228104512.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9PZ48Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9PZ48_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS07930Primary locus identifier stored in the genes table.
Old locus tagK0039_07875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000002.1Sequence record reported by the local genomic context database.
Genomic interval319 674-320 774 nt1 101 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span319 674-321 231 ntGCF_020748465::NZ_JAHZMP010000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span319 674-321 231 nt1 558 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
319 674 nt321 231 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS07930GCF_020748465#K0039_RS07930
HKClassicCurrent focus
319 674-320 774 nt · Forward (+)
K0039_RS07935GCF_020748465#K0039_RS07935
RRCheY
320 779-321 231 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS07930The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2715229
Simplified PFAM architecture for HKOC_2715229
PFAM domain coverage: 66 / 366 aa (18.0%)
1 aa366 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[177-242]
- Domain count: 1
- Matched identifier: HKOC_2715229
- Positioned domains: HisKA_3 177-242
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS07930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key