1 HAMP#1
227-294 aa · 68 aa · 12.8% of protein
Raw token
HAMP:227:0.00000000055:294:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS06580
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS06580Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 532 aa (46.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HisKA#2
307-373 aa · 67 aa · 12.6% of protein
Raw token
HisKA:307:0.00000000000000155:373:67:643 HATPase_c#3
420-529 aa · 110 aa · 20.7% of protein
Raw token
HATPase_c:420:1.96e-25:529:110:109- Raw architecture: HAMP:227:0.00000000055:294:68:69#HisKA:307:0.00000000000000155:373:67:64#HATPase_c:420:1.96e-25:529:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000002.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61815-64101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_06545RefSeq proteinWP_228104262.1
Context group ID
GCF_020748465::NZ_JAHZMP010000002.1::G00022Context members
K0039_RS06575K0039_RS06580
Partner locus tags
K0039_RS06575K0039_RS06580
Partner old locus tags
K0039_06540K0039_06545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228104262.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9PX81Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9PX81_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS06580Primary locus identifier stored in the genes table.
Old locus tagK0039_06545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000002.1Sequence record reported by the local genomic context database.
Genomic interval62 503-64 101 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span61 815-64 101 ntGCF_020748465::NZ_JAHZMP010000002.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000002.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span61 815-64 101 nt2 287 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 815 nt64 101 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS06575GCF_020748465#K0039_RS06575
RROmpR
61 815-62 516 nt · Forward (+)
K0039_RS06580GCF_020748465#K0039_RS06580
HKClassicCurrent focus
62 503-64 101 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS06580The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1350027
Simplified PFAM architecture for HKOC_1350027
PFAM domain coverage: 174 / 532 aa (32.7%)
1 aa532 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[308-372] | HATPase_c[420-528]
- Domain count: 2
- Matched identifier: HKOC_1350027
- Positioned domains: HisKA 308-372 ; HATPase_c 420-528
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS06580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key