1 Response_reg#1
4-113 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:4:4.64e-20:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS05535
Response regulator LytTR family
Terrisporobacter mayombei · GCF_020748465
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020748465#K0039_RS05535Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 238 aa (85.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
133-225 aa · 93 aa · 39.1% of protein
Raw token
LytTR:133:0.000000000000053:225:98:98- Raw architecture: Response_reg:4:4.64e-20:113:112:111#LytTR:133:0.000000000000053:225:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020748465::NZ_JAHZMP010000001.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1147496-1148212Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_05500RefSeq proteinWP_228104027.1
Context group ID
GCF_020748465::NZ_JAHZMP010000001.1::G00020Context members
K0039_RS05535
Partner locus tags
K0039_RS05535
Partner old locus tags
K0039_05500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228104027.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q1S9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q1S9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS05535Primary locus identifier stored in the genes table.
Old locus tagK0039_05500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 147 496-1 148 212 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 147 496-1 148 212 ntGCF_020748465::NZ_JAHZMP010000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 147 496-1 148 212 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 147 496 nt1 148 212 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K0039_RS05535GCF_020748465#K0039_RS05535
RRLytTRCurrent focus
1 147 496-1 148 212 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS05535The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0948172
Simplified PFAM architecture for RROC_0948172
PFAM domain coverage: 200 / 238 aa (84.0%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[134-224]
- Domain count: 2
- Matched identifier: RROC_0948172
- Positioned domains: Response_reg 4-112 ; LytTR 134-224
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS05535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key