1 KdpD#1
24-232 aa · 209 aa · 23.3% of protein
Raw token
KdpD:24:2.35e-134:232:209:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS05015
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength898 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS05015Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length898 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage390 / 898 aa (43.4%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa898 aa
Domain-by-domain annotation3 items
2 HisKA#2
670-737 aa · 68 aa · 7.6% of protein
Raw token
HisKA:670:0.0000000000451:737:68:643 HATPase_c#3
781-893 aa · 113 aa · 12.6% of protein
Raw token
HATPase_c:781:3.16e-26:893:113:109- Raw architecture: KdpD:24:2.35e-134:232:209:210#HisKA:670:0.0000000000451:737:68:64#HATPase_c:781:3.16e-26:893:113:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000001.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1043965-1047349Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_04980RefSeq proteinWP_228103936.1
Context group ID
GCF_020748465::NZ_JAHZMP010000001.1::G00019Context members
K0039_RS05015K0039_RS05020
Partner locus tags
K0039_RS05015K0039_RS05020
Partner old locus tags
K0039_04980K0039_04985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228103936.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q369Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q369_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS05015Primary locus identifier stored in the genes table.
Old locus tagK0039_04980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 043 965-1 046 661 nt2 697 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 043 965-1 047 349 ntGCF_020748465::NZ_JAHZMP010000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 043 965-1 047 349 nt3 385 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 043 965 nt1 047 349 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS05015GCF_020748465#K0039_RS05015
HKClassicCurrent focus
1 043 965-1 046 661 nt · Forward (+)
K0039_RS05020GCF_020748465#K0039_RS05020
RROmpR
1 046 654-1 047 349 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS05015The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0409813
Simplified PFAM architecture for HKOC_0409813
PFAM domain coverage: 492 / 898 aa (54.8%)
1 aa898 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[24-232] | DUF4118[401-505] | HisKA[670-736] | HATPase_c[782-892]
- Domain count: 4
- Matched identifier: HKOC_0409813
- Positioned domains: KdpD 24-232 ; DUF4118 401-505 ; HisKA 670-736 ; HATPase_c 782-892
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS05015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key