1 HAMP#1
71-139 aa · 69 aa · 18.8% of protein
Raw token
HAMP:71:0.0000000346:139:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS04830
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength367 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS04830Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length367 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 367 aa (67.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa367 aa
Domain-by-domain annotation3 items
2 HisKA#2
145-209 aa · 65 aa · 17.7% of protein
Raw token
HisKA:145:0.0000000000000466:209:65:643 HATPase_c#3
254-366 aa · 113 aa · 30.8% of protein
Raw token
HATPase_c:254:2.64e-33:366:113:109- Raw architecture: HAMP:71:0.0000000346:139:69:69#HisKA:145:0.0000000000000466:209:65:64#HATPase_c:254:2.64e-33:366:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000001.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1004743-1006504Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_04795RefSeq proteinWP_228103901.1
Context group ID
GCF_020748465::NZ_JAHZMP010000001.1::G00018Context members
K0039_RS04830K0039_RS04835
Partner locus tags
K0039_RS04830K0039_RS04835
Partner old locus tags
K0039_04795K0039_04800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_228103901.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS04830Primary locus identifier stored in the genes table.
Old locus tagK0039_04795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 004 743-1 005 846 nt1 104 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 004 743-1 006 504 ntGCF_020748465::NZ_JAHZMP010000001.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000001.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 004 743-1 006 504 nt1 762 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 004 743 nt1 006 504 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS04830GCF_020748465#K0039_RS04830
HKClassicCurrent focus
1 004 743-1 005 846 nt · Reverse (-)
K0039_RS04835GCF_020748465#K0039_RS04835
RROmpR
1 005 836-1 006 504 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS04830The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2708269
Simplified PFAM architecture for HKOC_2708269
PFAM domain coverage: 176 / 367 aa (48.0%)
1 aa367 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[146-208] | HATPase_c[254-366]
- Domain count: 2
- Matched identifier: HKOC_2708269
- Positioned domains: HisKA 146-208 ; HATPase_c 254-366
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS04830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key