1 HAMP#1
9-75 aa · 67 aa · 15.7% of protein
Raw token
HAMP:9:0.00000923:75:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS04030
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength427 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS04030Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HAMPPAS_9HisKAHATPase_c
Protein length427 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage342 / 427 aa (80.1%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa427 aa
Domain-by-domain annotation4 items
2 PAS_9#2
96-195 aa · 100 aa · 23.4% of protein
Raw token
PAS_9:96:0.00000163:195:103:1023 HisKA#3
202-268 aa · 67 aa · 15.7% of protein
Raw token
HisKA:202:2.53e-18:268:67:644 HATPase_c#4
319-426 aa · 108 aa · 25.3% of protein
Raw token
HATPase_c:319:7.91e-32:426:108:109- Raw architecture: HAMP:9:0.00000923:75:68:69#PAS_9:96:0.00000163:195:103:102#HisKA:202:2.53e-18:268:67:64#HATPase_c:319:7.91e-32:426:108:109
- Domain description: 1 HAMP,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000001.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span825707-827696Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_04000RefSeq proteinWP_228103750.1
Context group ID
GCF_020748465::NZ_JAHZMP010000001.1::G00017Context members
K0039_RS04030K0039_RS04035
Partner locus tags
K0039_RS04030K0039_RS04035
Partner old locus tags
K0039_04000K0039_04005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228103750.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q139Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q139_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS04030Primary locus identifier stored in the genes table.
Old locus tagK0039_04000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000001.1Sequence record reported by the local genomic context database.
Genomic interval825 707-826 990 nt1 284 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span825 707-827 696 ntGCF_020748465::NZ_JAHZMP010000001.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000001.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span825 707-827 696 nt1 990 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
825 707 nt827 696 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS04030GCF_020748465#K0039_RS04030
HKClassicCurrent focus
825 707-826 990 nt · Reverse (-)
K0039_RS04035GCF_020748465#K0039_RS04035
RROmpR
827 007-827 696 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS04030The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2202761
Simplified PFAM architecture for HKOC_2202761
PFAM domain coverage: 175 / 427 aa (41.0%)
1 aa427 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[202-268] | HATPase_c[318-425]
- Domain count: 2
- Matched identifier: HKOC_2202761
- Positioned domains: HisKA 202-268 ; HATPase_c 318-425
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS04030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key