1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:3.64e-31:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS03260
Response regulator OmpR family
Terrisporobacter mayombei · GCF_020748465
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_020748465#K0039_RS03260Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:148:5.4e-31:224:77:77- Raw architecture: Response_reg:4:3.64e-31:113:111:111#Trans_reg_C:148:5.4e-31:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_020748465::NZ_JAHZMP010000001.1::G00014
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span664598-668749Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_03225RefSeq proteinWP_228103614.1
Context group ID
GCF_020748465::NZ_JAHZMP010000001.1::G00014Context members
K0039_RS03255K0039_RS03260K0039_RS03265K0039_RS03270
Partner locus tags
K0039_RS03255K0039_RS03260K0039_RS03265K0039_RS03270
Partner old locus tags
K0039_03220K0039_03225K0039_03230K0039_03235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228103614.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q1G7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q1G7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS03260Primary locus identifier stored in the genes table.
Old locus tagK0039_03225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000001.1Sequence record reported by the local genomic context database.
Genomic interval665 829-666 524 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span664 598-668 749 ntGCF_020748465::NZ_JAHZMP010000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span664 598-668 749 nt4 152 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
664 598 nt668 749 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
K0039_RS03255GCF_020748465#K0039_RS03255
HKClassic
664 598-665 836 nt · Reverse (-)
K0039_RS03260GCF_020748465#K0039_RS03260
RROmpRCurrent focus
665 829-666 524 nt · Reverse (-)
K0039_RS03265GCF_020748465#K0039_RS03265
HKClassic
666 679-668 082 nt · Reverse (-)
K0039_RS03270GCF_020748465#K0039_RS03270
RROmpR
668 066-668 749 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS03260The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1178568
Simplified PFAM architecture for RROC_1178568
PFAM domain coverage: 186 / 231 aa (80.5%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1178568
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS03260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key