1 PAS_4#1
117-222 aa · 106 aa · 13.3% of protein
Raw token
PAS_4:117:0.000000000192:222:106:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS01405
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength798 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020748465#K0039_RS01405Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
PAS_4PAS_3HisKAHATPase_c
Protein length798 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage359 / 798 aa (45.0%)Merged over positioned domains only.
Domain description1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa798 aa
Domain-by-domain annotation4 items
2 PAS_3#2
437-508 aa · 72 aa · 9.0% of protein
Raw token
PAS_3:437:0.000000000165:508:76:893 HisKA#3
541-610 aa · 70 aa · 8.8% of protein
Raw token
HisKA:541:0.0000000000000118:610:70:644 HATPase_c#4
657-767 aa · 111 aa · 13.9% of protein
Raw token
HATPase_c:657:1.37e-33:767:111:109- Raw architecture: PAS_4:117:0.000000000192:222:106:110#PAS_3:437:0.000000000165:508:76:89#HisKA:541:0.0000000000000118:610:70:64#HATPase_c:657:1.37e-33:767:111:109
- Domain description: 1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020748465::NZ_JAHZMP010000001.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span279098-281494Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_01390RefSeq proteinWP_228103277.1
Context group ID
GCF_020748465::NZ_JAHZMP010000001.1::G00010Context members
K0039_RS01405
Partner locus tags
K0039_RS01405
Partner old locus tags
K0039_01390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228103277.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q1D4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q1D4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS01405Primary locus identifier stored in the genes table.
Old locus tagK0039_01390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000001.1Sequence record reported by the local genomic context database.
Genomic interval279 098-281 494 nt2 397 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span279 098-281 494 ntGCF_020748465::NZ_JAHZMP010000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span279 098-281 494 nt2 397 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
279 098 nt281 494 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K0039_RS01405GCF_020748465#K0039_RS01405
HKClassicCurrent focus
279 098-281 494 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS01405The current gene is the representative for this cluster.
PFAM architecturePAS_9 + PAS_4 + PAS_3 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0560568
Simplified PFAM architecture for HKOC_0560568
PFAM domain coverage: 442 / 798 aa (55.4%)
1 aa798 aa
PAS_9PAS_4PAS_3HisKAHATPase_c
- Simplified architecture: PAS_9 + PAS_4 + PAS_3 + HisKA + HATPase_c
- Raw architecture: PAS_9[12-97] | PAS_4[117-222] | PAS_3[436-505] | HisKA[541-610] | HATPase_c[657-766]
- Domain count: 5
- Matched identifier: HKOC_0560568
- Positioned domains: PAS_9 12-97 ; PAS_4 117-222 ; PAS_3 436-505 ; HisKA 541-610 ; HATPase_c 657-766
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS01405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key