1 Response_reg#1
5-116 aa · 112 aa · 58.3% of protein
Raw token
Response_reg:5:1.29e-31:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS00200
Response regulator, AmiR_NasR family
Terrisporobacter mayombei · GCF_020748465
ClassRRTypeAmiR_NasRLength192 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020748465#K0039_RS00200Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length192 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 192 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa192 aa
Domain-by-domain annotation2 items
2 ANTAR#2
138-186 aa · 49 aa · 25.5% of protein
Raw token
ANTAR:138:2.78e-19:186:49:49- Raw architecture: Response_reg:5:1.29e-31:116:112:111#ANTAR:138:2.78e-19:186:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020748465::NZ_JAHZMP010000001.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span31552-32130Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_00200RefSeq proteinWP_228103046.1
Context group ID
GCF_020748465::NZ_JAHZMP010000001.1::G00007Context members
K0039_RS00200
Partner locus tags
K0039_RS00200
Partner old locus tags
K0039_00200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228103046.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9PYX2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9PYX2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS00200Primary locus identifier stored in the genes table.
Old locus tagK0039_00200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000001.1Sequence record reported by the local genomic context database.
Genomic interval31 552-32 130 nt579 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 552-32 130 ntGCF_020748465::NZ_JAHZMP010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span31 552-32 130 nt579 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 552 nt32 130 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K0039_RS00200GCF_020748465#K0039_RS00200
RRAmiR_NasRCurrent focus
31 552-32 130 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS00200The current gene is the representative for this cluster.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2166802
Simplified PFAM architecture for RROC_2166802
PFAM domain coverage: 164 / 192 aa (85.4%)
1 aa192 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[5-115] | ANTAR[134-186]
- Domain count: 2
- Matched identifier: RROC_2166802
- Positioned domains: Response_reg 5-115 ; ANTAR 134-186
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS00200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key