1 SBP_bac_3#1
1-191 aa · 191 aa · 28.7% of protein
Raw token
SBP_bac_3:1:9e-17:191:204:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK488_RS04310
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_020708775
ClassHKTypeHybridLength666 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708775#LK488_RS04310Stable P2CS identifier used across views.
GenomeGCF_020708775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length666 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage492 / 666 aa (73.9%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa666 aa
Domain-by-domain annotation4 items
2 HisKA#2
286-351 aa · 66 aa · 9.9% of protein
Raw token
HisKA:286:2.28e-17:351:66:643 HATPase_c#3
400-517 aa · 118 aa · 17.7% of protein
Raw token
HATPase_c:400:3.21e-27:517:118:1094 Response_reg#4
538-654 aa · 117 aa · 17.6% of protein
Raw token
Response_reg:538:5.89e-30:654:117:111- Raw architecture: SBP_bac_3:1:9e-17:191:204:224#HisKA:286:2.28e-17:351:66:64#HATPase_c:400:3.21e-27:517:118:109#Response_reg:538:5.89e-30:654:117:111
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708775::NZ_JAJFCB010000009.1::G00064
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span130-4361Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK488_04315RefSeq proteinWP_416388283.1
Context group ID
GCF_020708775::NZ_JAJFCB010000009.1::G00064Context members
LK488_RS04310LK488_RS04320
Partner locus tags
LK488_RS04310LK488_RS04320
Partner old locus tags
LK488_04315LK488_04325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_416388283.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK488_RS04310Primary locus identifier stored in the genes table.
Old locus tagLK488_04315Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCB010000009.1Sequence record reported by the local genomic context database.
Genomic interval130-2 076 nt1 947 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span130-4 361 ntGCF_020708775::NZ_JAJFCB010000009.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708775::NZ_JAJFCB010000009.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCB010000009.1All displayed genes belong to this local TCS context.
Neighborhood span130-4 361 nt4 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
130 nt4 361 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK488_RS04310GCF_020708775#LK488_RS04310
HKHybridCurrent focus
130-2 076 nt · Forward (+)
LK488_RS04320GCF_020708775#LK488_RS04320
HKHybrid
2 439-4 361 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020708775#LK488_RS04310The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0857239
Simplified PFAM architecture for HKOC_0857239
PFAM domain coverage: 299 / 666 aa (44.9%)
1 aa666 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[286-351] | HATPase_c[401-516] | Response_reg[538-654]
- Domain count: 3
- Matched identifier: HKOC_0857239
- Positioned domains: HisKA 286-351 ; HATPase_c 401-516 ; Response_reg 538-654
Cluster members and taxonomy
Representative gene: GCF_020708775#LK488_RS04310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020708775
AssemblyASM2070877v1 · Contighaploid
Genome composition3 712 433 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 51 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key