1 HAMP#1
194-262 aa · 69 aa · 14.0% of protein
Raw token
HAMP:194:0.000000000219:262:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK488_RS01445
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020708775
ClassHKTypeClassicLength492 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708775#LK488_RS01445Stable P2CS identifier used across views.
GenomeGCF_020708775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length492 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 492 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa492 aa
Domain-by-domain annotation3 items
2 HisKA#2
266-331 aa · 66 aa · 13.4% of protein
Raw token
HisKA:266:0.00000000000726:331:66:643 HATPase_c#3
379-488 aa · 110 aa · 22.4% of protein
Raw token
HATPase_c:379:5.43e-29:488:110:109- Raw architecture: HAMP:194:0.000000000219:262:69:69#HisKA:266:0.00000000000726:331:66:64#HATPase_c:379:5.43e-29:488:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708775::NZ_JAJFCB010000002.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span117461-119573Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK488_01445RefSeq proteinWP_022462210.1
Context group ID
GCF_020708775::NZ_JAJFCB010000002.1::G00021Context members
LK488_RS01445LK488_RS01450
Partner locus tags
LK488_RS01445LK488_RS01450
Partner old locus tags
LK488_01445LK488_01450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022462210.1Primary protein accession used for annex mappings.
UniProt accessionA0AAE3F2L1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAE3F2L1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK488_RS01445Primary locus identifier stored in the genes table.
Old locus tagLK488_01445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCB010000002.1Sequence record reported by the local genomic context database.
Genomic interval117 461-118 939 nt1 479 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span117 461-119 573 ntGCF_020708775::NZ_JAJFCB010000002.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708775::NZ_JAJFCB010000002.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCB010000002.1All displayed genes belong to this local TCS context.
Neighborhood span117 461-119 573 nt2 113 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 461 nt119 573 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK488_RS01445GCF_020708775#LK488_RS01445
HKClassicCurrent focus
117 461-118 939 nt · Reverse (-)
LK488_RS01450GCF_020708775#LK488_RS01450
RROmpR
118 884-119 573 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460955#DWY63_RS04805Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1522308
Simplified PFAM architecture for HKOC_1522308
PFAM domain coverage: 176 / 492 aa (35.8%)
1 aa492 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[266-331] | HATPase_c[379-488]
- Domain count: 2
- Matched identifier: HKOC_1522308
- Positioned domains: HisKA 266-331 ; HATPase_c 379-488
Cluster members and taxonomy
Representative gene: GCF_003460955#DWY63_RS04805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020708775
AssemblyASM2070877v1 · Contighaploid
Genome composition3 712 433 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 51 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key