1 Response_reg#1
3-111 aa · 109 aa · 46.0% of protein
Raw token
Response_reg:3:4.71e-21:111:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK487_RS12840
Response regulator LytTR family
Agathobacter rectalis · GCF_020708695
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020708695#LK487_RS12840Stable P2CS identifier used across views.
GenomeGCF_020708695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 237 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
139-227 aa · 89 aa · 37.6% of protein
Raw token
LytTR:139:0.00000000000000824:227:95:98- Raw architecture: Response_reg:3:4.71e-21:111:113:111#LytTR:139:0.00000000000000824:227:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020708695::NZ_JAJFBX010000021.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span43694-44407Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK487_12860RefSeq proteinWP_055068080.1
Context group ID
GCF_020708695::NZ_JAJFBX010000021.1::G00024Context members
LK487_RS12840
Partner locus tags
LK487_RS12840
Partner old locus tags
LK487_12860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055068080.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WPS6Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WPS6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK487_RS12840Primary locus identifier stored in the genes table.
Old locus tagLK487_12860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBX010000021.1Sequence record reported by the local genomic context database.
Genomic interval43 694-44 407 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 694-44 407 ntGCF_020708695::NZ_JAJFBX010000021.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708695::NZ_JAJFBX010000021.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBX010000021.1All displayed genes belong to this local TCS context.
Neighborhood span43 694-44 407 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 694 nt44 407 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LK487_RS12840GCF_020708695#LK487_RS12840
RRLytTRCurrent focus
43 694-44 407 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406375#ARA17_RS09790Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0964715
Simplified PFAM architecture for RROC_0964715
PFAM domain coverage: 196 / 237 aa (82.7%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-110] | LytTR[139-226]
- Domain count: 2
- Matched identifier: RROC_0964715
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110 ; LytTR 139-226 ; LytTR 139-226
Cluster members and taxonomy
Representative gene: GCF_001406375#ARA17_RS09790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020708695
AssemblyASM2070869v1 · Contighaploid
Genome composition3 717 369 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 35 · RR 50CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key