1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:2.15e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK487_RS00295
Response regulator OmpR family
Agathobacter rectalis · GCF_020708695
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708695#LK487_RS00295Stable P2CS identifier used across views.
GenomeGCF_020708695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 230 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.6% of protein
Raw token
Trans_reg_C:151:2.28e-36:225:75:77- Raw architecture: Response_reg:5:2.15e-38:114:111:111#Trans_reg_C:151:2.28e-36:225:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708695::NZ_JAJFBX010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71184-73349Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK487_00295RefSeq proteinWP_012742455.1
Context group ID
GCF_020708695::NZ_JAJFBX010000001.1::G00001Context members
LK487_RS00295LK487_RS00300
Partner locus tags
LK487_RS00295LK487_RS00300
Partner old locus tags
LK487_00295LK487_00300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012742455.1Primary protein accession used for annex mappings.
UniProt accessionC4Z9D5Primary UniProt accession resolved in the annex database.
UniProt IDC4Z9D5_AGARVDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK487_RS00295Primary locus identifier stored in the genes table.
Old locus tagLK487_00295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBX010000001.1Sequence record reported by the local genomic context database.
Genomic interval71 184-71 876 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 184-73 349 ntGCF_020708695::NZ_JAJFBX010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708695::NZ_JAJFBX010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBX010000001.1All displayed genes belong to this local TCS context.
Neighborhood span71 184-73 349 nt2 166 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 184 nt73 349 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK487_RS00295GCF_020708695#LK487_RS00295
RROmpRCurrent focus
71 184-71 876 nt · Forward (+)
LK487_RS00300GCF_020708695#LK487_RS00300
HKClassic
71 898-73 349 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS07205Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199875
Simplified PFAM architecture for RROC_1199875
PFAM domain coverage: 184 / 230 aa (80.0%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[152-226]
- Domain count: 2
- Matched identifier: RROC_1199875
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 152-226 ; Trans_reg_C 152-226
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS07205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020708695
AssemblyASM2070869v1 · Contighaploid
Genome composition3 717 369 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 35 · RR 50CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key