1 Response_reg#1
4-112 aa · 109 aa · 49.3% of protein
Raw token
Response_reg:4:4.94e-32:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK487_RS01490
Response regulator OmpR family
Agathobacter rectalis · GCF_020708695
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708695#LK487_RS01490Stable P2CS identifier used across views.
GenomeGCF_020708695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 221 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-219 aa · 76 aa · 34.4% of protein
Raw token
Trans_reg_C:144:1.38e-32:219:78:77- Raw architecture: Response_reg:4:4.94e-32:112:110:111#Trans_reg_C:144:1.38e-32:219:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708695::NZ_JAJFBX010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span315642-317326Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK487_01485RefSeq proteinWP_025577695.1
Context group ID
GCF_020708695::NZ_JAJFBX010000001.1::G00003Context members
LK487_RS01485LK487_RS01490
Partner locus tags
LK487_RS01485LK487_RS01490
Partner old locus tags
LK487_01480LK487_01485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025577695.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WM03Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WM03_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK487_RS01490Primary locus identifier stored in the genes table.
Old locus tagLK487_01485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBX010000001.1Sequence record reported by the local genomic context database.
Genomic interval316 661-317 326 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span315 642-317 326 ntGCF_020708695::NZ_JAJFBX010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708695::NZ_JAJFBX010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBX010000001.1All displayed genes belong to this local TCS context.
Neighborhood span315 642-317 326 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
315 642 nt317 326 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK487_RS01485GCF_020708695#LK487_RS01485
HKClassic
315 642-316 658 nt · Reverse (-)
LK487_RS01490GCF_020708695#LK487_RS01490
RROmpRCurrent focus
316 661-317 326 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0104445Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1679756
Simplified PFAM architecture for RROC_1679756
PFAM domain coverage: 185 / 221 aa (83.7%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1679756
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0104445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020708695
AssemblyASM2070869v1 · Contighaploid
Genome composition3 717 369 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 35 · RR 50CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key