1 HAMP#1
289-358 aa · 70 aa · 11.9% of protein
Raw token
HAMP:289:0.00000112:358:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK487_RS02130
Histidine kinase, Classic
Agathobacter rectalis · GCF_020708695
ClassHKTypeClassicLength588 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708695#LK487_RS02130Stable P2CS identifier used across views.
GenomeGCF_020708695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length588 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 588 aa (43.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 His_kinase#2
380-459 aa · 80 aa · 13.6% of protein
Raw token
His_kinase:380:2.11e-31:459:80:803 HATPase_c#3
479-586 aa · 108 aa · 18.4% of protein
Raw token
HATPase_c:479:0.000000000276:586:108:109- Raw architecture: HAMP:289:0.00000112:358:70:69#His_kinase:380:2.11e-31:459:80:80#HATPase_c:479:0.000000000276:586:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708695::NZ_JAJFBX010000002.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42852-46225Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK487_02125RefSeq proteinWP_173848594.1
Context group ID
GCF_020708695::NZ_JAJFBX010000002.1::G00019Context members
LK487_RS02125LK487_RS02130
Partner locus tags
LK487_RS02125LK487_RS02130
Partner old locus tags
LK487_02120LK487_02125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173848594.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WGR1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WGR1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK487_RS02130Primary locus identifier stored in the genes table.
Old locus tagLK487_02125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBX010000002.1Sequence record reported by the local genomic context database.
Genomic interval44 459-46 225 nt1 767 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 852-46 225 ntGCF_020708695::NZ_JAJFBX010000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708695::NZ_JAJFBX010000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBX010000002.1All displayed genes belong to this local TCS context.
Neighborhood span42 852-46 225 nt3 374 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 852 nt46 225 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK487_RS02125GCF_020708695#LK487_RS02125
RRunclassified
42 852-44 447 nt · Reverse (-)
LK487_RS02130GCF_020708695#LK487_RS02130
HKClassicCurrent focus
44 459-46 225 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013303785#G5A04_RS01885Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1122113
Simplified PFAM architecture for HKOC_1122113
PFAM domain coverage: 187 / 588 aa (31.8%)
1 aa588 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[380-459] | HATPase_c[479-585]
- Domain count: 2
- Matched identifier: HKOC_1122113
- Positioned domains: His_kinase 380-459 ; HATPase_c 479-585
Cluster members and taxonomy
Representative gene: GCF_013303785#G5A04_RS01885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020708695
AssemblyASM2070869v1 · Contighaploid
Genome composition3 717 369 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 35 · RR 50CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key