1 HAMP#1
283-349 aa · 67 aa · 11.8% of protein
Raw token
HAMP:283:0.0000000000203:349:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS16410
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength567 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS16410Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length567 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 567 aa (43.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa567 aa
Domain-by-domain annotation3 items
2 His_kinase#2
365-443 aa · 79 aa · 13.9% of protein
Raw token
His_kinase:365:2.77e-27:443:79:803 HATPase_c#3
461-561 aa · 101 aa · 17.8% of protein
Raw token
HATPase_c:461:0.0000000000128:561:110:109- Raw architecture: HAMP:283:0.0000000000203:349:67:69#His_kinase:365:2.77e-27:443:79:80#HATPase_c:461:0.0000000000128:561:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000032.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8417-11633Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_16480RefSeq proteinWP_021650824.1
Context group ID
GCF_020686995::NZ_JAJEPT010000032.1::G00035Context members
LKD46_RS16405LKD46_RS16410
Partner locus tags
LKD46_RS16405LKD46_RS16410
Partner old locus tags
LKD46_16475LKD46_16480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021650824.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4W446Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4W446_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS16410Primary locus identifier stored in the genes table.
Old locus tagLKD46_16480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000032.1Sequence record reported by the local genomic context database.
Genomic interval9 930-11 633 nt1 704 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 417-11 633 ntGCF_020686995::NZ_JAJEPT010000032.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000032.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000032.1All displayed genes belong to this local TCS context.
Neighborhood span8 417-11 633 nt3 217 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 417 nt11 633 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS16405GCF_020686995#LKD46_RS16405
RRunclassified
8 417-9 955 nt · Forward (+)
LKD46_RS16410GCF_020686995#LKD46_RS16410
HKClassicCurrent focus
9 930-11 633 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS19165Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1217470
Simplified PFAM architecture for HKOC_1217470
PFAM domain coverage: 227 / 569 aa (39.9%)
1 aa569 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[301-350] | His_kinase[367-443] | HATPase_c[464-563]
- Domain count: 3
- Matched identifier: HKOC_1217470
- Positioned domains: HAMP 301-350 ; His_kinase 367-443 ; HATPase_c 464-563
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS19165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key