1 HisKA#1
79-141 aa · 63 aa · 21.5% of protein
Raw token
HisKA:79:0.0000000000000646:141:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS00395
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength293 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020686995#LKD46_RS00395Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length293 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 293 aa (56.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa293 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
190-292 aa · 103 aa · 35.2% of protein
Raw token
HATPase_c:190:4.5e-16:292:105:109- Raw architecture: HisKA:79:0.0000000000000646:141:63:64#HATPase_c:190:4.5e-16:292:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020686995::NZ_JAJEPT010000001.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span67340-68221Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_00395RefSeq proteinWP_227573663.1
Context group ID
GCF_020686995::NZ_JAJEPT010000001.1::G00020Context members
LKD46_RS00395
Partner locus tags
LKD46_RS00395
Partner old locus tags
LKD46_00395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_227573663.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1CQW1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1CQW1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS00395Primary locus identifier stored in the genes table.
Old locus tagLKD46_00395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000001.1Sequence record reported by the local genomic context database.
Genomic interval67 340-68 221 nt882 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 340-68 221 ntGCF_020686995::NZ_JAJEPT010000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000001.1All displayed genes belong to this local TCS context.
Neighborhood span67 340-68 221 nt882 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 340 nt68 221 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LKD46_RS00395GCF_020686995#LKD46_RS00395
HKClassicCurrent focus
67 340-68 221 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020686995#LKD46_RS00395The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2893624
Simplified PFAM architecture for HKOC_2893624
PFAM domain coverage: 166 / 293 aa (56.7%)
1 aa293 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[79-141] | HATPase_c[190-292]
- Domain count: 2
- Matched identifier: HKOC_2893624
- Positioned domains: HisKA 79-141 ; HATPase_c 190-292
Cluster members and taxonomy
Representative gene: GCF_020686995#LKD46_RS00395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key