1 HAMP#1
285-351 aa · 67 aa · 11.8% of protein
Raw token
HAMP:285:0.000000000022:351:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DMI82_RS19165
Histidine kinase, Classic
Blautia sp. BCRC 81119 · GCF_003184505
ClassHKTypeClassicLength569 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003184505#DMI82_RS19165Stable P2CS identifier used across views.
GenomeGCF_003184505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length569 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 569 aa (43.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa569 aa
Domain-by-domain annotation3 items
2 His_kinase#2
367-445 aa · 79 aa · 13.9% of protein
Raw token
His_kinase:367:2.95e-27:445:79:803 HATPase_c#3
463-563 aa · 101 aa · 17.8% of protein
Raw token
HATPase_c:463:0.0000000000127:563:110:109- Raw architecture: HAMP:285:0.000000000022:351:67:69#His_kinase:367:2.95e-27:445:79:80#HATPase_c:463:0.0000000000127:563:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003184505::NZ_QJHD01000049.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8459-11675Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDMI82_19165RefSeq proteinWP_227945536.1
Context group ID
GCF_003184505::NZ_QJHD01000049.1::G00034Context members
DMI82_RS19160DMI82_RS19165
Partner locus tags
DMI82_RS19160DMI82_RS19165
Partner old locus tags
DMI82_19160DMI82_19165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227945536.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDMI82_RS19165Primary locus identifier stored in the genes table.
Old locus tagDMI82_19165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QJHD01000049.1Sequence record reported by the local genomic context database.
Genomic interval9 966-11 675 nt1 710 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 459-11 675 ntGCF_003184505::NZ_QJHD01000049.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003184505::NZ_QJHD01000049.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QJHD01000049.1All displayed genes belong to this local TCS context.
Neighborhood span8 459-11 675 nt3 217 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 459 nt11 675 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DMI82_RS19160GCF_003184505#DMI82_RS19160
RRunclassified
8 459-9 997 nt · Forward (+)
DMI82_RS19165GCF_003184505#DMI82_RS19165
HKClassicCurrent focus
9 966-11 675 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS19165The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1217470
Simplified PFAM architecture for HKOC_1217470
PFAM domain coverage: 227 / 569 aa (39.9%)
1 aa569 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[301-350] | His_kinase[367-443] | HATPase_c[464-563]
- Domain count: 3
- Matched identifier: HKOC_1217470
- Positioned domains: HAMP 301-350 ; His_kinase 367-443 ; HATPase_c 464-563
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS19165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 212 480 · GCF_003184505
AssemblyASM318450v1 · Contighaploid
Genome composition4 097 535 bp · 44,0% GCBlautia sp. BCRC 81119
Signal transduction countsGenes 83 · HK 40 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key