1 HisKA#1
300-367 aa · 68 aa · 12.9% of protein
Raw token
HisKA:300:0.00000000000314:367:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS04165
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength527 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS04165Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 527 aa (34.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
410-522 aa · 113 aa · 21.4% of protein
Raw token
HATPase_c:410:2.25e-30:522:114:109- Raw architecture: HisKA:300:0.00000000000314:367:68:64#HATPase_c:410:2.25e-30:522:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000003.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span135011-137339Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_04175RefSeq proteinWP_227573838.1
Context group ID
GCF_020686995::NZ_JAJEPT010000003.1::G00040Context members
LKD46_RS04165LKD46_RS04170
Partner locus tags
LKD46_RS04165LKD46_RS04170
Partner old locus tags
LKD46_04175LKD46_04180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227573838.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS04165Primary locus identifier stored in the genes table.
Old locus tagLKD46_04175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000003.1Sequence record reported by the local genomic context database.
Genomic interval135 011-136 594 nt1 584 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span135 011-137 339 ntGCF_020686995::NZ_JAJEPT010000003.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000003.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000003.1All displayed genes belong to this local TCS context.
Neighborhood span135 011-137 339 nt2 329 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 011 nt137 339 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS04165GCF_020686995#LKD46_RS04165
HKClassicCurrent focus
135 011-136 594 nt · Forward (+)
LKD46_RS04170GCF_020686995#LKD46_RS04170
RROmpR
136 587-137 339 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020686995#LKD46_RS04165The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1368455
Simplified PFAM architecture for HKOC_1368455
PFAM domain coverage: 286 / 527 aa (54.3%)
1 aa527 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[31-137] | HisKA[300-367] | HATPase_c[411-521]
- Domain count: 3
- Matched identifier: HKOC_1368455
- Positioned domains: DUF4118 31-137 ; HisKA 300-367 ; HATPase_c 411-521
Cluster members and taxonomy
Representative gene: GCF_020686995#LKD46_RS04165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key