1 HAMP#1
190-258 aa · 69 aa · 13.7% of protein
Raw token
HAMP:190:0.0000000000000306:258:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LKD46_RS01110
Histidine kinase, Classic
Blautia fusiformis · GCF_020686995
ClassHKTypeClassicLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020686995#LKD46_RS01110Stable P2CS identifier used across views.
GenomeGCF_020686995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 505 aa (49.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HisKA#2
283-350 aa · 68 aa · 13.5% of protein
Raw token
HisKA:283:0.00000000000000195:350:68:643 HATPase_c#3
395-505 aa · 111 aa · 22.0% of protein
Raw token
HATPase_c:395:3.78e-20:505:112:109- Raw architecture: HAMP:190:0.0000000000000306:258:69:69#HisKA:283:0.00000000000000195:350:68:64#HATPase_c:395:3.78e-20:505:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020686995::NZ_JAJEPT010000001.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span208933-211127Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLKD46_01115RefSeq proteinWP_022426553.1
Context group ID
GCF_020686995::NZ_JAJEPT010000001.1::G00023Context members
LKD46_RS01105LKD46_RS01110
Partner locus tags
LKD46_RS01105LKD46_RS01110
Partner old locus tags
LKD46_01110LKD46_01115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022426553.1Primary protein accession used for annex mappings.
UniProt accessionA0A367G180Primary UniProt accession resolved in the annex database.
UniProt IDA0A367G180_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLKD46_RS01110Primary locus identifier stored in the genes table.
Old locus tagLKD46_01115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJEPT010000001.1Sequence record reported by the local genomic context database.
Genomic interval209 610-211 127 nt1 518 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span208 933-211 127 ntGCF_020686995::NZ_JAJEPT010000001.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020686995::NZ_JAJEPT010000001.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJEPT010000001.1All displayed genes belong to this local TCS context.
Neighborhood span208 933-211 127 nt2 195 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
208 933 nt211 127 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LKD46_RS01105GCF_020686995#LKD46_RS01105
RROmpR
208 933-209 613 nt · Forward (+)
LKD46_RS01110GCF_020686995#LKD46_RS01110
HKClassicCurrent focus
209 610-211 127 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001487165#BN3261_RS02100Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1449722
Simplified PFAM architecture for HKOC_1449722
PFAM domain coverage: 228 / 505 aa (45.1%)
1 aa505 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[207-257] | HisKA[283-350] | HATPase_c[396-504]
- Domain count: 3
- Matched identifier: HKOC_1449722
- Positioned domains: HAMP 207-257 ; HisKA 283-350 ; HATPase_c 396-504
Cluster members and taxonomy
Representative gene: GCF_001487165#BN3261_RS02100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 881 264 · GCF_020686995
AssemblyASM2068699v1 · Contigreference genome · haploid
Genome composition3 534 643 bp · 44,0% GCBlautia fusiformis
Signal transduction countsGenes 91 · HK 41 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key