1 HAMP#1
190-258 aa · 69 aa · 13.7% of protein
Raw token
HAMP:190:0.0000000000000306:258:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN3261_RS02100
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_001487165
ClassHKTypeClassicLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001487165#BN3261_RS02100Stable P2CS identifier used across views.
GenomeGCF_001487165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 505 aa (49.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HisKA#2
283-350 aa · 68 aa · 13.5% of protein
Raw token
HisKA:283:0.00000000000000195:350:68:643 HATPase_c#3
395-505 aa · 111 aa · 22.0% of protein
Raw token
HATPase_c:395:3.78e-20:505:112:109- Raw architecture: HAMP:190:0.0000000000000306:258:69:69#HisKA:283:0.00000000000000195:350:68:64#HATPase_c:395:3.78e-20:505:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001487165::NZ_LN913006.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span223462-225656Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001487165::NZ_LN913006.1::G00006Context members
BN3261_RS02095BN3261_RS02100
Partner locus tags
BN3261_RS02095BN3261_RS02100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022426553.1Primary protein accession used for annex mappings.
UniProt accessionA0A367G180Primary UniProt accession resolved in the annex database.
UniProt IDA0A367G180_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN3261_RS02100Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LN913006.1Sequence record reported by the local genomic context database.
Genomic interval224 139-225 656 nt1 518 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span223 462-225 656 ntGCF_001487165::NZ_LN913006.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001487165::NZ_LN913006.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LN913006.1All displayed genes belong to this local TCS context.
Neighborhood span223 462-225 656 nt2 195 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
223 462 nt225 656 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN3261_RS02095GCF_001487165#BN3261_RS02095
RROmpR
223 462-224 142 nt · Forward (+)
BN3261_RS02100GCF_001487165#BN3261_RS02100
HKClassicCurrent focus
224 139-225 656 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001487165#BN3261_RS02100The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1449722
Simplified PFAM architecture for HKOC_1449722
PFAM domain coverage: 228 / 505 aa (45.1%)
1 aa505 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[207-257] | HisKA[283-350] | HATPase_c[396-504]
- Domain count: 3
- Matched identifier: HKOC_1449722
- Positioned domains: HAMP 207-257 ; HisKA 283-350 ; HATPase_c 396-504
Cluster members and taxonomy
Representative gene: GCF_001487165#BN3261_RS02100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_001487165
AssemblyBlautia massiliensis1 · Scaffoldhaploid
Genome composition3 717 343 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key