1 dCache_1#1
42-278 aa · 237 aa · 38.9% of protein
Raw token
dCache_1:42:0.000000045:278:243:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LJE11_RS08560
Histidine kinase, Classic
Blautia sp. DFI.1.216 · GCF_020594215
ClassHKTypeClassicLength610 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020594215#LJE11_RS08560Stable P2CS identifier used across views.
GenomeGCF_020594215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length610 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage489 / 610 aa (80.2%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa610 aa
Domain-by-domain annotation4 items
2 HAMP#2
296-364 aa · 69 aa · 11.3% of protein
Raw token
HAMP:296:0.0000000000000248:364:69:693 His_kinase#3
380-458 aa · 79 aa · 13.0% of protein
Raw token
His_kinase:380:3.84e-34:458:79:804 HATPase_c#4
481-584 aa · 104 aa · 17.0% of protein
Raw token
HATPase_c:481:0.0000000000369:584:104:109- Raw architecture: dCache_1:42:0.000000045:278:243:195#HAMP:296:0.0000000000000248:364:69:69#His_kinase:380:3.84e-34:458:79:80#HATPase_c:481:0.0000000000369:584:104:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020594215::NZ_JAJDML010000017.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39802-43247Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLJE11_08560RefSeq proteinWP_227295822.1
Context group ID
GCF_020594215::NZ_JAJDML010000017.1::G00015Context members
LJE11_RS08555LJE11_RS08560
Partner locus tags
LJE11_RS08555LJE11_RS08560
Partner old locus tags
LJE11_08555LJE11_08560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227295822.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLJE11_RS08560Primary locus identifier stored in the genes table.
Old locus tagLJE11_08560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJDML010000017.1Sequence record reported by the local genomic context database.
Genomic interval41 415-43 247 nt1 833 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 802-43 247 ntGCF_020594215::NZ_JAJDML010000017.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020594215::NZ_JAJDML010000017.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJDML010000017.1All displayed genes belong to this local TCS context.
Neighborhood span39 802-43 247 nt3 446 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 802 nt43 247 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LJE11_RS08555GCF_020594215#LJE11_RS08555
RRunclassified
39 802-41 415 nt · Reverse (-)
LJE11_RS08560GCF_020594215#LJE11_RS08560
HKClassicCurrent focus
41 415-43 247 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020594215#LJE11_RS08560The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1006644
Simplified PFAM architecture for HKOC_1006644
PFAM domain coverage: 238 / 610 aa (39.0%)
1 aa610 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[313-364] | His_kinase[380-458] | HATPase_c[478-584]
- Domain count: 3
- Matched identifier: HKOC_1006644
- Positioned domains: HAMP 313-364 ; His_kinase 380-458 ; HATPase_c 478-584
Cluster members and taxonomy
Representative gene: GCF_020594215#LJE11_RS08560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 885 264 · GCF_020594215
AssemblyASM2059421v1 · Contighaploid
Genome composition4 167 967 bp · 41,5% GCBlautia sp. DFI.1.216
Signal transduction countsGenes 120 · HK 59 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key