1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:1.16e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LJE11_RS02180
Response regulator OmpR family
Blautia sp. DFI.1.216 · GCF_020594215
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020594215#LJE11_RS02180Stable P2CS identifier used across views.
GenomeGCF_020594215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:8.97e-37:227:77:77- Raw architecture: Response_reg:5:1.16e-40:114:111:111#Trans_reg_C:151:8.97e-37:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020594215::NZ_JAJDML010000003.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span110628-111320Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLJE11_02180RefSeq proteinWP_025578647.1
Context group ID
GCF_020594215::NZ_JAJDML010000003.1::G00027Context members
LJE11_RS02180
Partner locus tags
LJE11_RS02180
Partner old locus tags
LJE11_02180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025578647.1Primary protein accession used for annex mappings.
UniProt accessionA0A173ZHN3Primary UniProt accession resolved in the annex database.
UniProt IDA0A173ZHN3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLJE11_RS02180Primary locus identifier stored in the genes table.
Old locus tagLJE11_02180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJDML010000003.1Sequence record reported by the local genomic context database.
Genomic interval110 628-111 320 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span110 628-111 320 ntGCF_020594215::NZ_JAJDML010000003.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020594215::NZ_JAJDML010000003.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJDML010000003.1All displayed genes belong to this local TCS context.
Neighborhood span110 628-111 320 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 628 nt111 320 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LJE11_RS02180GCF_020594215#LJE11_RS02180
RROmpRCurrent focus
110 628-111 320 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0108610Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202597
Simplified PFAM architecture for RROC_1202597
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1202597
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 151-227 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0108610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 885 264 · GCF_020594215
AssemblyASM2059421v1 · Contighaploid
Genome composition4 167 967 bp · 41,5% GCBlautia sp. DFI.1.216
Signal transduction countsGenes 120 · HK 59 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key