1 HisKA#1
77-146 aa · 70 aa · 23.5% of protein
Raw token
HisKA:77:0.00000000000166:146:70:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI229_RS00320
Histidine kinase, Classic
[Ruminococcus] torques · GCF_020563085
ClassHKTypeClassicLength298 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020563085#LI229_RS00320Stable P2CS identifier used across views.
GenomeGCF_020563085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 298 aa (59.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa298 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-297 aa · 106 aa · 35.6% of protein
Raw token
HATPase_c:192:0.0000000000000253:297:108:109- Raw architecture: HisKA:77:0.00000000000166:146:70:64#HATPase_c:192:0.0000000000000253:297:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020563085::NZ_JAJCPV010000001.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span63326-64222Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI229_00320RefSeq proteinWP_004845785.1
Context group ID
GCF_020563085::NZ_JAJCPV010000001.1::G00004Context members
LI229_RS00320
Partner locus tags
LI229_RS00320
Partner old locus tags
LI229_00320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004845785.1Primary protein accession used for annex mappings.
UniProt accessionA5KK53Primary UniProt accession resolved in the annex database.
UniProt IDA5KK53_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI229_RS00320Primary locus identifier stored in the genes table.
Old locus tagLI229_00320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCPV010000001.1Sequence record reported by the local genomic context database.
Genomic interval63 326-64 222 nt897 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span63 326-64 222 ntGCF_020563085::NZ_JAJCPV010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020563085::NZ_JAJCPV010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCPV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span63 326-64 222 nt897 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 326 nt64 222 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LI229_RS00320GCF_020563085#LI229_RS00320
HKClassicCurrent focus
63 326-64 222 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS03805Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2888635
Simplified PFAM architecture for HKOC_2888635
PFAM domain coverage: 160 / 298 aa (53.7%)
1 aa298 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-145] | HATPase_c[194-294]
- Domain count: 2
- Matched identifier: HKOC_2888635
- Positioned domains: HisKA 87-145 ; HATPase_c 194-294
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS03805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_020563085
AssemblyASM2056308v1 · Contighaploid
Genome composition2 791 089 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 48 · HK 22 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key