1 Response_reg#1
6-115 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:6:1.55e-38:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI147_RS03205
Response regulator OmpR family
Blautia wexlerae · GCF_020560345
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020560345#LI147_RS03205Stable P2CS identifier used across views.
GenomeGCF_020560345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:3.2e-24:229:77:77- Raw architecture: Response_reg:6:1.55e-38:115:111:111#Trans_reg_C:153:3.2e-24:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020560345::NZ_JAJCMK010000004.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36613-38875Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI147_03205RefSeq proteinWP_019161280.1
Context group ID
GCF_020560345::NZ_JAJCMK010000004.1::G00030Context members
LI147_RS03205LI147_RS03210
Partner locus tags
LI147_RS03205LI147_RS03210
Partner old locus tags
LI147_03205LI147_03210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_019161280.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DYU7Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DYU7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI147_RS03205Primary locus identifier stored in the genes table.
Old locus tagLI147_03205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCMK010000004.1Sequence record reported by the local genomic context database.
Genomic interval36 613-37 317 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span36 613-38 875 ntGCF_020560345::NZ_JAJCMK010000004.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020560345::NZ_JAJCMK010000004.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCMK010000004.1All displayed genes belong to this local TCS context.
Neighborhood span36 613-38 875 nt2 263 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 613 nt38 875 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI147_RS03205GCF_020560345#LI147_RS03205
RROmpRCurrent focus
36 613-37 317 nt · Reverse (-)
LI147_RS03210GCF_020560345#LI147_RS03210
HKClassic
37 310-38 875 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424085#G599_RS0103685Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1048881
Simplified PFAM architecture for RROC_1048881
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_1048881
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-229 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_000424085#G599_RS0103685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_020560345
AssemblyASM2056034v1 · Contighaploid
Genome composition4 076 393 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 99 · HK 47 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key