1 Response_reg#1
6-115 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:6:1.55e-38:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G599_RS0103685
Response regulator OmpR family
Blautia wexlerae AGR2146 · GCF_000424085
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424085#G599_RS0103685Stable P2CS identifier used across views.
GenomeGCF_000424085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:3.2e-24:229:77:77- Raw architecture: Response_reg:6:1.55e-38:115:111:111#Trans_reg_C:153:3.2e-24:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424085::NZ_AUJF01000008.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51137-53399Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424085::NZ_AUJF01000008.1::G00005Context members
G599_RS0103680G599_RS0103685
Partner locus tags
G599_RS0103680G599_RS0103685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_019161280.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DYU7Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DYU7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG599_RS0103685Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJF01000008.1Sequence record reported by the local genomic context database.
Genomic interval52 695-53 399 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 137-53 399 ntGCF_000424085::NZ_AUJF01000008.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424085::NZ_AUJF01000008.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJF01000008.1All displayed genes belong to this local TCS context.
Neighborhood span51 137-53 399 nt2 263 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 137 nt53 399 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G599_RS0103680GCF_000424085#G599_RS0103680
HKClassic
51 137-52 702 nt · Forward (+)
G599_RS0103685GCF_000424085#G599_RS0103685
RROmpRCurrent focus
52 695-53 399 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424085#G599_RS0103685The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1048881
Simplified PFAM architecture for RROC_1048881
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_1048881
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-229 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_000424085#G599_RS0103685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 691 · GCF_000424085
AssemblyASM42408v1 · Scaffoldhaploid
Genome composition3 583 102 bp · 41,5% GCBlautia wexlerae AGR2146
Signal transduction countsGenes 67 · HK 29 · RR 34CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key