1 HisKA#1
228-294 aa · 67 aa · 14.8% of protein
Raw token
HisKA:228:0.00000000025:294:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI147_RS00010
Histidine kinase, Classic
Blautia wexlerae · GCF_020560345
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020560345#LI147_RS00010Stable P2CS identifier used across views.
GenomeGCF_020560345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 454 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-451 aa · 109 aa · 24.0% of protein
Raw token
HATPase_c:343:1.07e-19:451:109:109- Raw architecture: HisKA:228:0.00000000025:294:67:64#HATPase_c:343:1.07e-19:451:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020560345::NZ_JAJCMK010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span115-2185Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI147_00010RefSeq proteinWP_118588201.1
Context group ID
GCF_020560345::NZ_JAJCMK010000001.1::G00001Context members
LI147_RS00005LI147_RS00010
Partner locus tags
LI147_RS00005LI147_RS00010
Partner old locus tags
LI147_00005LI147_00010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118588201.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI147_RS00010Primary locus identifier stored in the genes table.
Old locus tagLI147_00010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCMK010000001.1Sequence record reported by the local genomic context database.
Genomic interval821-2 185 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span115-2 185 ntGCF_020560345::NZ_JAJCMK010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020560345::NZ_JAJCMK010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCMK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span115-2 185 nt2 071 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 nt2 185 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI147_RS00005GCF_020560345#LI147_RS00005
RROmpR
115-816 nt · Forward (+)
LI147_RS00010GCF_020560345#LI147_RS00010
HKClassicCurrent focus
821-2 185 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301985#G4972_RS16855Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1916754
Simplified PFAM architecture for HKOC_1916754
PFAM domain coverage: 174 / 454 aa (38.3%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[229-293] | HATPase_c[343-451]
- Domain count: 2
- Matched identifier: HKOC_1916754
- Positioned domains: HisKA 229-293 ; HATPase_c 343-451
Cluster members and taxonomy
Representative gene: GCF_013301985#G4972_RS16855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_020560345
AssemblyASM2056034v1 · Contighaploid
Genome composition4 076 393 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 99 · HK 47 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key