1 Response_reg#1
4-112 aa · 109 aa · 48.0% of protein
Raw token
Response_reg:4:2.46e-23:112:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ97_RS03625
Response regulator OmpR family
Blautia obeum · GCF_020557905
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557905#LIZ97_RS03625Stable P2CS identifier used across views.
GenomeGCF_020557905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 227 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:145:2.37e-26:220:77:77- Raw architecture: Response_reg:4:2.46e-23:112:113:111#Trans_reg_C:145:2.37e-26:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557905::NZ_JAJCJV010000003.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span219790-221538Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ97_03625RefSeq proteinWP_227080751.1
Context group ID
GCF_020557905::NZ_JAJCJV010000003.1::G00030Context members
LIZ97_RS03625LIZ97_RS03630
Partner locus tags
LIZ97_RS03625LIZ97_RS03630
Partner old locus tags
LIZ97_03625LIZ97_03630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_227080751.1Primary protein accession used for annex mappings.
UniProt accessionA0ABQ0C0R7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABQ0C0R7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ97_RS03625Primary locus identifier stored in the genes table.
Old locus tagLIZ97_03625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJV010000003.1Sequence record reported by the local genomic context database.
Genomic interval219 790-220 473 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span219 790-221 538 ntGCF_020557905::NZ_JAJCJV010000003.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557905::NZ_JAJCJV010000003.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJV010000003.1All displayed genes belong to this local TCS context.
Neighborhood span219 790-221 538 nt1 749 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 790 nt221 538 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ97_RS03625GCF_020557905#LIZ97_RS03625
RROmpRCurrent focus
219 790-220 473 nt · Forward (+)
LIZ97_RS03630GCF_020557905#LIZ97_RS03630
HKClassic
220 525-221 538 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557905#LIZ97_RS03625The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1380024
Simplified PFAM architecture for RROC_1380024
PFAM domain coverage: 184 / 227 aa (81.1%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1380024
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_020557905#LIZ97_RS03625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_020557905
AssemblyASM2055790v1 · Contighaploid
Genome composition3 926 727 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 101 · HK 51 · RR 49CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key