1 Response_reg#1
3-104 aa · 102 aa · 30.4% of protein
Raw token
Response_reg:3:6.28e-28:104:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ82_RS09580
Response regulator, unclassified
Agathobacter rectalis · GCF_020557675
ClassRRTypeunclassifiedLength336 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557675#LIZ82_RS09580Stable P2CS identifier used across views.
GenomeGCF_020557675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length336 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage174 / 336 aa (51.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa336 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
239-277 aa · 39 aa · 11.6% of protein
Raw token
HTH_AraC:239:0.000000767:277:39:423 HTH_AraC#3
296-328 aa · 33 aa · 9.8% of protein
Raw token
HTH_AraC:296:0.0000000162:328:33:42- Raw architecture: Response_reg:3:6.28e-28:104:102:111#HTH_AraC:239:0.000000767:277:39:42#HTH_AraC:296:0.0000000162:328:33:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557675::NZ_JAJCJQ010000013.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15111-17911Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ82_09575RefSeq proteinWP_306783153.1
Context group ID
GCF_020557675::NZ_JAJCJQ010000013.1::G00008Context members
LIZ82_RS09580LIZ82_RS09585
Partner locus tags
LIZ82_RS09580LIZ82_RS09585
Partner old locus tags
LIZ82_09575LIZ82_09580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306783153.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UJ65Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UJ65_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ82_RS09580Primary locus identifier stored in the genes table.
Old locus tagLIZ82_09575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJQ010000013.1Sequence record reported by the local genomic context database.
Genomic interval15 111-16 121 nt1 011 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 111-17 911 ntGCF_020557675::NZ_JAJCJQ010000013.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557675::NZ_JAJCJQ010000013.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJQ010000013.1All displayed genes belong to this local TCS context.
Neighborhood span15 111-17 911 nt2 801 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 111 nt17 911 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ82_RS09580GCF_020557675#LIZ82_RS09580
RRunclassifiedCurrent focus
15 111-16 121 nt · Reverse (-)
LIZ82_RS09585GCF_020557675#LIZ82_RS09585
HKClassic
16 118-17 911 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557675#LIZ82_RS09580The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0510147
Simplified PFAM architecture for RROC_0510147
PFAM domain coverage: 180 / 336 aa (53.6%)
1 aa336 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-105] | HTH_18[252-328]
- Domain count: 2
- Matched identifier: RROC_0510147
- Positioned domains: Response_reg 3-105 ; HTH_18 252-328
Cluster members and taxonomy
Representative gene: GCF_020557675#LIZ82_RS09580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557675
AssemblyASM2055767v1 · Contighaploid
Genome composition3 474 463 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 36 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key