1 Hpt#1
5-98 aa · 94 aa · 13.3% of protein
Raw token
Hpt:5:2.02e-17:98:94:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ82_RS01030
Histidine kinase, CheA
Agathobacter rectalis · GCF_020557675
ClassHKTypeCheALength706 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557675#LIZ82_RS01030Stable P2CS identifier used across views.
GenomeGCF_020557675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length706 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 706 aa (60.3%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa706 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
324-387 aa · 64 aa · 9.1% of protein
Raw token
H-kinase_dim:324:0.00000000000000103:387:67:673 HATPase_c#3
435-574 aa · 140 aa · 19.8% of protein
Raw token
HATPase_c:435:3.95e-16:574:140:1094 CheW#4
579-706 aa · 128 aa · 18.1% of protein
Raw token
CheW:579:2.58e-30:706:135:138- Raw architecture: Hpt:5:2.02e-17:98:94:84#H-kinase_dim:324:0.00000000000000103:387:67:67#HATPase_c:435:3.95e-16:574:140:109#CheW:579:2.58e-30:706:135:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557675::NZ_JAJCJQ010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span205979-209162Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ82_01030RefSeq proteinWP_306782660.1
Context group ID
GCF_020557675::NZ_JAJCJQ010000001.1::G00002Context members
LIZ82_RS01030LIZ82_RS01035
Partner locus tags
LIZ82_RS01030LIZ82_RS01035
Partner old locus tags
LIZ82_01030LIZ82_01035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306782660.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UIR3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UIR3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ82_RS01030Primary locus identifier stored in the genes table.
Old locus tagLIZ82_01030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval205 979-208 099 nt2 121 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span205 979-209 162 ntGCF_020557675::NZ_JAJCJQ010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557675::NZ_JAJCJQ010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span205 979-209 162 nt3 184 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
205 979 nt209 162 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ82_RS01030GCF_020557675#LIZ82_RS01030
HKCheACurrent focus
205 979-208 099 nt · Reverse (-)
LIZ82_RS01035GCF_020557675#LIZ82_RS01035
RRCheB
208 101-209 162 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557675#LIZ82_RS01030The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0758400
Simplified PFAM architecture for HKOC_0758400
PFAM domain coverage: 502 / 706 aa (71.1%)
1 aa706 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[5-97] | P2[183-260] | H-kinase_dim[323-387] | HATPase_c[436-574] | CheW[579-705]
- Domain count: 5
- Matched identifier: HKOC_0758400
- Positioned domains: Hpt 5-97 ; P2 183-260 ; H-kinase_dim 323-387 ; HATPase_c 436-574 ; CheW 579-705
Cluster members and taxonomy
Representative gene: GCF_020557675#LIZ82_RS01030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557675
AssemblyASM2055767v1 · Contighaploid
Genome composition3 474 463 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 36 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key