1 CheW#1
15-149 aa · 135 aa · 45.2% of protein
Raw token
CheW:15:2.78e-33:149:138:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ82_RS08225
Response regulator CheV family
Agathobacter rectalis · GCF_020557675
ClassRRTypeCheVLength299 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020557675#LIZ82_RS08225Stable P2CS identifier used across views.
GenomeGCF_020557675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length299 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 299 aa (85.6%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa299 aa
Domain-by-domain annotation2 items
2 Response_reg#2
173-293 aa · 121 aa · 40.5% of protein
Raw token
Response_reg:173:5.27e-21:293:124:111- Raw architecture: CheW:15:2.78e-33:149:138:138#Response_reg:173:5.27e-21:293:124:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020557675::NZ_JAJCJQ010000009.1::G00048
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span79681-80580Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ82_08225RefSeq proteinWP_306783048.1
Context group ID
GCF_020557675::NZ_JAJCJQ010000009.1::G00048Context members
LIZ82_RS08225
Partner locus tags
LIZ82_RS08225
Partner old locus tags
LIZ82_08225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306783048.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UQE7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UQE7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ82_RS08225Primary locus identifier stored in the genes table.
Old locus tagLIZ82_08225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJQ010000009.1Sequence record reported by the local genomic context database.
Genomic interval79 681-80 580 nt900 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span79 681-80 580 ntGCF_020557675::NZ_JAJCJQ010000009.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557675::NZ_JAJCJQ010000009.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJQ010000009.1All displayed genes belong to this local TCS context.
Neighborhood span79 681-80 580 nt900 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 681 nt80 580 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIZ82_RS08225GCF_020557675#LIZ82_RS08225
RRCheVCurrent focus
79 681-80 580 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557675#LIZ82_RS08225The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0575607
Simplified PFAM architecture for RROC_0575607
PFAM domain coverage: 254 / 299 aa (84.9%)
1 aa299 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[15-148] | Response_reg[173-292]
- Domain count: 2
- Matched identifier: RROC_0575607
- Positioned domains: CheW 15-148 ; Response_reg 173-292
Cluster members and taxonomy
Representative gene: GCF_020557675#LIZ82_RS08225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557675
AssemblyASM2055767v1 · Contighaploid
Genome composition3 474 463 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 36 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key