1 HAMP#1
90-159 aa · 70 aa · 17.6% of protein
Raw token
HAMP:90:0.000000000337:159:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS05655
Histidine kinase, Classic
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeClassicLength398 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020509505#LC479_RS05655Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length398 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage234 / 398 aa (58.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa398 aa
Domain-by-domain annotation3 items
2 HisKA#2
176-239 aa · 64 aa · 16.1% of protein
Raw token
HisKA:176:0.0000000208:239:64:643 HATPase_c#3
284-383 aa · 100 aa · 25.1% of protein
Raw token
HATPase_c:284:0.0000000000000145:383:102:109- Raw architecture: HAMP:90:0.000000000337:159:70:69#HisKA:176:0.0000000208:239:64:64#HATPase_c:284:0.0000000000000145:383:102:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020509505::NZ_JAIXOC010000001.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1246447-1248302Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_05655RefSeq proteinWP_033142993.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00028Context members
LC479_RS05650LC479_RS05655
Partner locus tags
LC479_RS05650LC479_RS05655
Partner old locus tags
LC479_05650LC479_05655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033142993.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FJ49Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FJ49_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS05655Primary locus identifier stored in the genes table.
Old locus tagLC479_05655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 247 106-1 248 302 nt1 197 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 246 447-1 248 302 ntGCF_020509505::NZ_JAIXOC010000001.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 246 447-1 248 302 nt1 856 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 246 447 nt1 248 302 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC479_RS05650GCF_020509505#LC479_RS05650
RROmpR
1 246 447-1 247 118 nt · Forward (+)
LC479_RS05655GCF_020509505#LC479_RS05655
HKClassicCurrent focus
1 247 106-1 248 302 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS21550Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2462148
Simplified PFAM architecture for HKOC_2462148
PFAM domain coverage: 215 / 398 aa (54.0%)
1 aa398 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[112-159] | HisKA[174-239] | HATPase_c[284-384]
- Domain count: 3
- Matched identifier: HKOC_2462148
- Positioned domains: HAMP 112-159 ; HisKA 174-239 ; HATPase_c 284-384
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS21550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key