1 HAMP#1
90-159 aa · 70 aa · 17.6% of protein
Raw token
HAMP:90:0.000000000337:159:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS21550
Histidine kinase, Classic
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeClassicLength398 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS21550Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length398 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage234 / 398 aa (58.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa398 aa
Domain-by-domain annotation3 items
2 HisKA#2
176-239 aa · 64 aa · 16.1% of protein
Raw token
HisKA:176:0.0000000208:239:64:643 HATPase_c#3
284-383 aa · 100 aa · 25.1% of protein
Raw token
HATPase_c:284:0.0000000000000145:383:102:109- Raw architecture: HAMP:90:0.000000000337:159:70:69#HisKA:176:0.0000000208:239:64:64#HATPase_c:284:0.0000000000000145:383:102:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000017.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119864-121719Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_21540RefSeq proteinWP_033142993.1
Context group ID
GCF_003478165::NZ_QUER01000017.1::G00051Context members
DXA40_RS21545DXA40_RS21550
Partner locus tags
DXA40_RS21545DXA40_RS21550
Partner old locus tags
DXA40_21535DXA40_21540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033142993.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FJ49Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FJ49_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS21550Primary locus identifier stored in the genes table.
Old locus tagDXA40_21540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000017.1Sequence record reported by the local genomic context database.
Genomic interval120 523-121 719 nt1 197 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span119 864-121 719 ntGCF_003478165::NZ_QUER01000017.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000017.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000017.1All displayed genes belong to this local TCS context.
Neighborhood span119 864-121 719 nt1 856 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 864 nt121 719 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS21545GCF_003478165#DXA40_RS21545
RROmpR
119 864-120 535 nt · Forward (+)
DXA40_RS21550GCF_003478165#DXA40_RS21550
HKClassicCurrent focus
120 523-121 719 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS21550The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2462148
Simplified PFAM architecture for HKOC_2462148
PFAM domain coverage: 215 / 398 aa (54.0%)
1 aa398 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[112-159] | HisKA[174-239] | HATPase_c[284-384]
- Domain count: 3
- Matched identifier: HKOC_2462148
- Positioned domains: HAMP 112-159 ; HisKA 174-239 ; HATPase_c 284-384
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS21550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key