1 Response_reg#1
6-115 aa · 110 aa · 20.4% of protein
Raw token
Response_reg:6:6.19e-29:115:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS01140
Response regulator, unclassified
Blautia sp. RD014232 · GCF_020509505
ClassRRTypeunclassifiedLength540 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020509505#LC479_RS01140Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length540 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 540 aa (35.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa540 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
441-482 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:441:0.00000000643:482:42:423 HTH_AraC#3
495-532 aa · 38 aa · 7.0% of protein
Raw token
HTH_AraC:495:0.000000000776:532:38:42- Raw architecture: Response_reg:6:6.19e-29:115:110:111#HTH_AraC:441:0.00000000643:482:42:42#HTH_AraC:495:0.000000000776:532:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020509505::NZ_JAIXOC010000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span265729-269101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_01140RefSeq proteinWP_054352056.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00006Context members
LC479_RS01140LC479_RS01145
Partner locus tags
LC479_RS01140LC479_RS01145
Partner old locus tags
LC479_01140LC479_01145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054352056.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F8Y0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F8Y0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS01140Primary locus identifier stored in the genes table.
Old locus tagLC479_01140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval265 729-267 351 nt1 623 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span265 729-269 101 ntGCF_020509505::NZ_JAIXOC010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span265 729-269 101 nt3 373 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
265 729 nt269 101 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC479_RS01140GCF_020509505#LC479_RS01140
RRunclassifiedCurrent focus
265 729-267 351 nt · Reverse (-)
LC479_RS01145GCF_020509505#LC479_RS01145
HKClassic
267 323-269 101 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS02085Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0089815
Simplified PFAM architecture for RROC_0089815
PFAM domain coverage: 190 / 540 aa (35.2%)
1 aa540 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-115] | HTH_18[454-533]
- Domain count: 2
- Matched identifier: RROC_0089815
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; HTH_18 454-533 ; HTH_18 454-533
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS02085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key