1 HAMP#1
186-254 aa · 69 aa · 14.4% of protein
Raw token
HAMP:186:0.00000118:254:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS04125
Histidine kinase, Classic
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020509505#LC479_RS04125Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 479 aa (53.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation3 items
2 His_kinase#2
270-349 aa · 80 aa · 16.7% of protein
Raw token
His_kinase:270:1.55e-35:349:80:803 HATPase_c#3
368-474 aa · 107 aa · 22.3% of protein
Raw token
HATPase_c:368:0.000000000000225:474:109:109- Raw architecture: HAMP:186:0.00000118:254:69:69#His_kinase:270:1.55e-35:349:80:80#HATPase_c:368:0.000000000000225:474:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020509505::NZ_JAIXOC010000001.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span922568-925619Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_04125RefSeq proteinWP_226441939.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00023Context members
LC479_RS04125LC479_RS04130
Partner locus tags
LC479_RS04125LC479_RS04130
Partner old locus tags
LC479_04125LC479_04130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226441939.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS04125Primary locus identifier stored in the genes table.
Old locus tagLC479_04125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval922 568-924 007 nt1 440 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span922 568-925 619 ntGCF_020509505::NZ_JAIXOC010000001.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span922 568-925 619 nt3 052 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
922 568 nt925 619 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC479_RS04125GCF_020509505#LC479_RS04125
HKClassicCurrent focus
922 568-924 007 nt · Forward (+)
LC479_RS04130GCF_020509505#LC479_RS04130
RRunclassified
924 027-925 619 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020215665#LC508_RS11435Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1107693
Simplified PFAM architecture for HKOC_1107693
PFAM domain coverage: 185 / 591 aa (31.3%)
1 aa591 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[382-461] | HATPase_c[481-585]
- Domain count: 2
- Matched identifier: HKOC_1107693
- Positioned domains: His_kinase 382-461 ; HATPase_c 481-585
Cluster members and taxonomy
Representative gene: GCF_020215665#LC508_RS11435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key