1 HAMP#1
315-384 aa · 70 aa · 11.6% of protein
Raw token
HAMP:315:0.00000000424:384:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC508_RS14235
Histidine kinase, Classic
Blautia parvula · GCF_020215665
ClassHKTypeClassicLength601 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020215665#LC508_RS14235Stable P2CS identifier used across views.
GenomeGCF_020215665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length601 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 601 aa (42.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa601 aa
Domain-by-domain annotation3 items
2 His_kinase#2
399-478 aa · 80 aa · 13.3% of protein
Raw token
His_kinase:399:8.05e-31:478:80:803 HATPase_c#3
495-601 aa · 107 aa · 17.8% of protein
Raw token
HATPase_c:495:0.0000000671:601:114:109- Raw architecture: HAMP:315:0.00000000424:384:70:69#His_kinase:399:8.05e-31:478:80:80#HATPase_c:495:0.0000000671:601:114:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020215665::NZ_CP084061.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3051264-3054597Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC508_14235RefSeq proteinWP_225305379.1
Context group ID
GCF_020215665::NZ_CP084061.1::G00061Context members
LC508_RS14230LC508_RS14235
Partner locus tags
LC508_RS14230LC508_RS14235
Partner old locus tags
LC508_14230LC508_14235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_225305379.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC508_RS14235Primary locus identifier stored in the genes table.
Old locus tagLC508_14235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084061.1Sequence record reported by the local genomic context database.
Genomic interval3 052 792-3 054 597 nt1 806 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 051 264-3 054 597 ntGCF_020215665::NZ_CP084061.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020215665::NZ_CP084061.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084061.1All displayed genes belong to this local TCS context.
Neighborhood span3 051 264-3 054 597 nt3 334 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 051 264 nt3 054 597 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC508_RS14230GCF_020215665#LC508_RS14230
RRunclassified
3 051 264-3 052 781 nt · Reverse (-)
LC508_RS14235GCF_020215665#LC508_RS14235
HKClassicCurrent focus
3 052 792-3 054 597 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020215665#LC508_RS14235The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1050006
Simplified PFAM architecture for HKOC_1050006
PFAM domain coverage: 226 / 601 aa (37.6%)
1 aa601 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[341-383] | His_kinase[399-476] | HATPase_c[496-600]
- Domain count: 3
- Matched identifier: HKOC_1050006
- Positioned domains: HAMP 341-383 ; His_kinase 399-476 ; HATPase_c 496-600
Cluster members and taxonomy
Representative gene: GCF_020215665#LC508_RS14235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 527 · GCF_020215665
AssemblyASM2021566v1 · Complete Genomereference genome · haploid
Genome composition6 247 046 bp · 46,5% GCBlautia parvula
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key