1 Response_reg#1
4-105 aa · 102 aa · 20.0% of protein
Raw token
Response_reg:4:1.08e-24:105:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC508_RS12770
Response regulator, unclassified
Blautia parvula · GCF_020215665
ClassRRTypeunclassifiedLength509 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020215665#LC508_RS12770Stable P2CS identifier used across views.
GenomeGCF_020215665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage181 / 509 aa (35.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
413-454 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:413:0.0000487:454:42:423 HTH_AraC#3
466-502 aa · 37 aa · 7.3% of protein
Raw token
HTH_AraC:466:0.0000125:502:37:42- Raw architecture: Response_reg:4:1.08e-24:105:102:111#HTH_AraC:413:0.0000487:454:42:42#HTH_AraC:466:0.0000125:502:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020215665::NZ_CP084061.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2727974-2731251Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC508_12770RefSeq proteinWP_118593763.1
Context group ID
GCF_020215665::NZ_CP084061.1::G00049Context members
LC508_RS12765LC508_RS12770
Partner locus tags
LC508_RS12765LC508_RS12770
Partner old locus tags
LC508_12765LC508_12770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118593763.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F9Z4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F9Z4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC508_RS12770Primary locus identifier stored in the genes table.
Old locus tagLC508_12770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084061.1Sequence record reported by the local genomic context database.
Genomic interval2 729 722-2 731 251 nt1 530 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 727 974-2 731 251 ntGCF_020215665::NZ_CP084061.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020215665::NZ_CP084061.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084061.1All displayed genes belong to this local TCS context.
Neighborhood span2 727 974-2 731 251 nt3 278 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 727 974 nt2 731 251 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC508_RS12765GCF_020215665#LC508_RS12765
HKClassic
2 727 974-2 729 740 nt · Reverse (-)
LC508_RS12770GCF_020215665#LC508_RS12770
RRunclassifiedCurrent focus
2 729 722-2 731 251 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS00415Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0147580
Simplified PFAM architecture for RROC_0147580
PFAM domain coverage: 187 / 509 aa (36.7%)
1 aa509 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[429-504]
- Domain count: 2
- Matched identifier: RROC_0147580
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 429-504 ; HTH_18 429-504
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS00415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 527 · GCF_020215665
AssemblyASM2021566v1 · Complete Genomereference genome · haploid
Genome composition6 247 046 bp · 46,5% GCBlautia parvula
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key