1 Response_reg#1
3-116 aa · 114 aa · 21.5% of protein
Raw token
Response_reg:3:4.05e-20:116:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC508_RS12620
Response regulator, unclassified
Blautia parvula · GCF_020215665
ClassRRTypeunclassifiedLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020215665#LC508_RS12620Stable P2CS identifier used across views.
GenomeGCF_020215665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 530 aa (28.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
487-525 aa · 39 aa · 7.4% of protein
Raw token
HTH_AraC:487:0.0000000015:525:39:42- Raw architecture: Response_reg:3:4.05e-20:116:118:111#HTH_AraC:487:0.0000000015:525:39:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020215665::NZ_CP084061.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2686586-2689899Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC508_12620RefSeq proteinWP_146051756.1
Context group ID
GCF_020215665::NZ_CP084061.1::G00048Context members
LC508_RS12620LC508_RS12625
Partner locus tags
LC508_RS12620LC508_RS12625
Partner old locus tags
LC508_12620LC508_12625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_146051756.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FA25Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FA25_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC508_RS12620Primary locus identifier stored in the genes table.
Old locus tagLC508_12620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084061.1Sequence record reported by the local genomic context database.
Genomic interval2 686 586-2 688 178 nt1 593 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 686 586-2 689 899 ntGCF_020215665::NZ_CP084061.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020215665::NZ_CP084061.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084061.1All displayed genes belong to this local TCS context.
Neighborhood span2 686 586-2 689 899 nt3 314 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 686 586 nt2 689 899 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC508_RS12620GCF_020215665#LC508_RS12620
RRunclassifiedCurrent focus
2 686 586-2 688 178 nt · Reverse (-)
LC508_RS12625GCF_020215665#LC508_RS12625
HKClassic
2 688 184-2 689 899 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS00265Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0111771
Simplified PFAM architecture for RROC_0111771
PFAM domain coverage: 193 / 530 aa (36.4%)
1 aa530 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-115] | HTH_18[447-526]
- Domain count: 2
- Matched identifier: RROC_0111771
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; HTH_18 447-526 ; HTH_18 447-526
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS00265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 527 · GCF_020215665
AssemblyASM2021566v1 · Complete Genomereference genome · haploid
Genome composition6 247 046 bp · 46,5% GCBlautia parvula
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key