1 Response_reg#1
3-115 aa · 113 aa · 22.3% of protein
Raw token
Response_reg:3:2.37e-32:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC508_RS09670
Response regulator, unclassified
Blautia parvula · GCF_020215665
ClassRRTypeunclassifiedLength507 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020215665#LC508_RS09670Stable P2CS identifier used across views.
GenomeGCF_020215665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length507 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 507 aa (37.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa507 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
414-455 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:414:0.000000253:455:42:423 HTH_AraC#3
469-505 aa · 37 aa · 7.3% of protein
Raw token
HTH_AraC:469:0.0000000411:505:37:42- Raw architecture: Response_reg:3:2.37e-32:115:113:111#HTH_AraC:414:0.000000253:455:42:42#HTH_AraC:469:0.0000000411:505:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020215665::NZ_CP084061.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2059166-2062509Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC508_09670RefSeq proteinWP_103732250.1
Context group ID
GCF_020215665::NZ_CP084061.1::G00037Context members
LC508_RS09670LC508_RS09675
Partner locus tags
LC508_RS09670LC508_RS09675
Partner old locus tags
LC508_09670LC508_09675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103732250.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FH16Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FH16_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC508_RS09670Primary locus identifier stored in the genes table.
Old locus tagLC508_09670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084061.1Sequence record reported by the local genomic context database.
Genomic interval2 059 166-2 060 689 nt1 524 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 059 166-2 062 509 ntGCF_020215665::NZ_CP084061.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020215665::NZ_CP084061.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084061.1All displayed genes belong to this local TCS context.
Neighborhood span2 059 166-2 062 509 nt3 344 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 059 166 nt2 062 509 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC508_RS09670GCF_020215665#LC508_RS09670
RRunclassifiedCurrent focus
2 059 166-2 060 689 nt · Reverse (-)
LC508_RS09675GCF_020215665#LC508_RS09675
HKClassic
2 060 686-2 062 509 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS09390Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0150228
Simplified PFAM architecture for RROC_0150228
PFAM domain coverage: 190 / 507 aa (37.5%)
1 aa507 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-114] | HTH_18[428-505]
- Domain count: 2
- Matched identifier: RROC_0150228
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; HTH_18 428-505 ; HTH_18 428-505
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS09390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 527 · GCF_020215665
AssemblyASM2021566v1 · Complete Genomereference genome · haploid
Genome composition6 247 046 bp · 46,5% GCBlautia parvula
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key