1 Response_reg#1
4-117 aa · 114 aa · 46.7% of protein
Raw token
Response_reg:4:1.74e-32:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC508_RS09475
Response regulator, unclassified
Blautia parvula · GCF_020215665
ClassRRTypeunclassifiedLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020215665#LC508_RS09475Stable P2CS identifier used across views.
GenomeGCF_020215665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 244 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
151-192 aa · 42 aa · 17.2% of protein
Raw token
HTH_AraC:151:0.0000201:192:42:423 HTH_AraC#3
207-242 aa · 36 aa · 14.8% of protein
Raw token
HTH_AraC:207:0.00000000186:242:36:42- Raw architecture: Response_reg:4:1.74e-32:117:114:111#HTH_AraC:151:0.0000201:192:42:42#HTH_AraC:207:0.00000000186:242:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020215665::NZ_CP084061.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2008678-2009412Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC508_09475RefSeq proteinWP_103731298.1
Context group ID
GCF_020215665::NZ_CP084061.1::G00035Context members
LC508_RS09475
Partner locus tags
LC508_RS09475
Partner old locus tags
LC508_09475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103731298.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FGY7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FGY7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC508_RS09475Primary locus identifier stored in the genes table.
Old locus tagLC508_09475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084061.1Sequence record reported by the local genomic context database.
Genomic interval2 008 678-2 009 412 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 008 678-2 009 412 ntGCF_020215665::NZ_CP084061.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020215665::NZ_CP084061.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084061.1All displayed genes belong to this local TCS context.
Neighborhood span2 008 678-2 009 412 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 008 678 nt2 009 412 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LC508_RS09475GCF_020215665#LC508_RS09475
RRunclassifiedCurrent focus
2 008 678-2 009 412 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS09590Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0810722
Simplified PFAM architecture for RROC_0810722
PFAM domain coverage: 192 / 244 aa (78.7%)
1 aa244 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[165-242]
- Domain count: 2
- Matched identifier: RROC_0810722
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 165-242 ; HTH_18 165-242
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS09590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 527 · GCF_020215665
AssemblyASM2021566v1 · Complete Genomereference genome · haploid
Genome composition6 247 046 bp · 46,5% GCBlautia parvula
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key