1 Response_reg#1
7-120 aa · 114 aa · 13.0% of protein
Raw token
Response_reg:7:4.01e-25:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC508_RS04810
Response regulator, PleD_VieA family
Blautia parvula · GCF_020215665
ClassRRTypePleD_VieALength878 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020215665#LC508_RS04810Stable P2CS identifier used across views.
GenomeGCF_020215665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length878 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage695 / 878 aa (79.2%)Merged over positioned domains only.
Domain description2 Response_reg,2 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa878 aa
Domain-by-domain annotation5 items
2 GGDEF#2
137-225 aa · 89 aa · 10.1% of protein
Raw token
GGDEF:137:0.00000000000108:225:91:1603 EAL#3
308-539 aa · 232 aa · 26.4% of protein
Raw token
EAL:308:2.63e-71:539:232:2354 Response_reg#4
575-684 aa · 110 aa · 12.5% of protein
Raw token
Response_reg:575:0.000000672:684:113:1115 GGDEF#5
706-855 aa · 150 aa · 17.1% of protein
Raw token
GGDEF:706:5.17e-34:855:160:160- Raw architecture: Response_reg:7:4.01e-25:120:115:111#GGDEF:137:0.00000000000108:225:91:160#EAL:308:2.63e-71:539:232:235#Response_reg:575:0.000000672:684:113:111#GGDEF:706:5.17e-34:855:160:160
- Domain description: 2 Response_reg,2 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020215665::NZ_CP084061.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span999849-1002485Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC508_04810RefSeq proteinWP_052099574.1
Context group ID
GCF_020215665::NZ_CP084061.1::G00019Context members
LC508_RS04810
Partner locus tags
LC508_RS04810
Partner old locus tags
LC508_04810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_052099574.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FLS7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FLS7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC508_RS04810Primary locus identifier stored in the genes table.
Old locus tagLC508_04810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084061.1Sequence record reported by the local genomic context database.
Genomic interval999 849-1 002 485 nt2 637 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span999 849-1 002 485 ntGCF_020215665::NZ_CP084061.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020215665::NZ_CP084061.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084061.1All displayed genes belong to this local TCS context.
Neighborhood span999 849-1 002 485 nt2 637 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
999 849 nt1 002 485 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LC508_RS04810GCF_020215665#LC508_RS04810
RRPleD_VieACurrent focus
999 849-1 002 485 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS23030Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF + EAL + Response_reg + GGDEF5 domains in the representative PFAM annotation.
PFAM architecture for RROC_0011468
Simplified PFAM architecture for RROC_0011468
PFAM domain coverage: 722 / 878 aa (82.2%)
1 aa878 aa
Response_regGGDEFEALResponse_regGGDEF
- Simplified architecture: Response_reg + GGDEF + EAL + Response_reg + GGDEF
- Raw architecture: Response_reg[7-119] | GGDEF[137-256] | EAL[307-539] | Response_reg[575-682] | GGDEF[707-854]
- Domain count: 5
- Matched identifier: RROC_0011468
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; GGDEF 137-256 ; GGDEF 137-256 ; EAL 307-539 ; EAL 307-539 ; Response_reg 575-682 ; Response_reg 575-682 ; GGDEF 707-854 ; GGDEF 707-854
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS23030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 527 · GCF_020215665
AssemblyASM2021566v1 · Complete Genomereference genome · haploid
Genome composition6 247 046 bp · 46,5% GCBlautia parvula
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key