1 HisKA#1
180-244 aa · 65 aa · 14.8% of protein
Raw token
HisKA:180:0.0000000000178:244:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSW03_RS03510
Histidine kinase, Classic
Bifidobacterium breve · GCF_019126785
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019126785#KSW03_RS03510Stable P2CS identifier used across views.
GenomeGCF_019126785Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 438 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
308-420 aa · 113 aa · 25.8% of protein
Raw token
HATPase_c:308:1.1e-29:420:113:109- Raw architecture: HisKA:180:0.0000000000178:244:65:64#HATPase_c:308:1.1e-29:420:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019126785::NZ_JAHODT010000006.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32843-34982Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSW03_03505RefSeq proteinWP_065464124.1
Context group ID
GCF_019126785::NZ_JAHODT010000006.1::G00014Context members
KSW03_RS03505KSW03_RS03510
Partner locus tags
KSW03_RS03505KSW03_RS03510
Partner old locus tags
KSW03_03500KSW03_03505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_065464124.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4TXC9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4TXC9_BIFBRDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSW03_RS03510Primary locus identifier stored in the genes table.
Old locus tagKSW03_03505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHODT010000006.1Sequence record reported by the local genomic context database.
Genomic interval33 666-34 982 nt1 317 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 843-34 982 ntGCF_019126785::NZ_JAHODT010000006.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019126785::NZ_JAHODT010000006.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHODT010000006.1All displayed genes belong to this local TCS context.
Neighborhood span32 843-34 982 nt2 140 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 843 nt34 982 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSW03_RS03505GCF_019126785#KSW03_RS03505
RROmpR
32 843-33 547 nt · Reverse (-)
KSW03_RS03510GCF_019126785#KSW03_RS03510
HKClassicCurrent focus
33 666-34 982 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685705#BAC95_RS00815Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2093986
Simplified PFAM architecture for HKOC_2093986
PFAM domain coverage: 176 / 438 aa (40.2%)
1 aa438 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2093986
- Positioned domains: HisKA 180-244 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_001685705#BAC95_RS00815
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 46 over 46 total members. Page 1 / 1.
GCF_001685705#BAC95_RS00815 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_019126785
AssemblyASM1912678v1 · Contighaploid
Genome composition2 354 860 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 22 · HK 8 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key