1 HisKA#1
180-244 aa · 65 aa · 14.8% of protein
Raw token
HisKA:180:0.0000000000178:244:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ43_RS01755
Histidine kinase, Classic
Bifidobacterium breve · GCF_020539185
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020539185#LIQ43_RS01755Stable P2CS identifier used across views.
GenomeGCF_020539185Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 438 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
308-420 aa · 113 aa · 25.8% of protein
Raw token
HATPase_c:308:1.1e-29:420:113:109- Raw architecture: HisKA:180:0.0000000000178:244:65:64#HATPase_c:308:1.1e-29:420:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020539185::NZ_JAJBPS010000002.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span145889-148028Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ43_01755RefSeq proteinWP_065464124.1
Context group ID
GCF_020539185::NZ_JAJBPS010000002.1::G00010Context members
LIQ43_RS01755LIQ43_RS01760
Partner locus tags
LIQ43_RS01755LIQ43_RS01760
Partner old locus tags
LIQ43_01755LIQ43_01760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_065464124.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4TXC9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4TXC9_BIFBRDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ43_RS01755Primary locus identifier stored in the genes table.
Old locus tagLIQ43_01755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPS010000002.1Sequence record reported by the local genomic context database.
Genomic interval145 889-147 205 nt1 317 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span145 889-148 028 ntGCF_020539185::NZ_JAJBPS010000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020539185::NZ_JAJBPS010000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPS010000002.1All displayed genes belong to this local TCS context.
Neighborhood span145 889-148 028 nt2 140 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
145 889 nt148 028 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ43_RS01755GCF_020539185#LIQ43_RS01755
HKClassicCurrent focus
145 889-147 205 nt · Forward (+)
LIQ43_RS01760GCF_020539185#LIQ43_RS01760
RROmpR
147 324-148 028 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685705#BAC95_RS00815Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2093986
Simplified PFAM architecture for HKOC_2093986
PFAM domain coverage: 176 / 438 aa (40.2%)
1 aa438 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2093986
- Positioned domains: HisKA 180-244 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_001685705#BAC95_RS00815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_020539185
AssemblyASM2053918v1 · Contighaploid
Genome composition2 382 550 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 23 · HK 8 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key