1 HisKA#1
180-244 aa · 65 aa · 14.8% of protein
Raw token
HisKA:180:0.0000000000178:244:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD04_RS08625
Histidine kinase, Classic
Bifidobacterium breve · GCF_001685885
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001685885#BAD04_RS08625Stable P2CS identifier used across views.
GenomeGCF_001685885Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 438 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
308-420 aa · 113 aa · 25.8% of protein
Raw token
HATPase_c:308:1.1e-29:420:113:109- Raw architecture: HisKA:180:0.0000000000178:244:65:64#HATPase_c:308:1.1e-29:420:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001685885::NZ_BCXU01000039.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span163610-165749Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001685885::NZ_BCXU01000039.1::G00010Context members
BAD04_RS08625BAD04_RS08630
Partner locus tags
BAD04_RS08625BAD04_RS08630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_065464124.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4TXC9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4TXC9_BIFBRDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD04_RS08625Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCXU01000039.1Sequence record reported by the local genomic context database.
Genomic interval163 610-164 926 nt1 317 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span163 610-165 749 ntGCF_001685885::NZ_BCXU01000039.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001685885::NZ_BCXU01000039.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCXU01000039.1All displayed genes belong to this local TCS context.
Neighborhood span163 610-165 749 nt2 140 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 610 nt165 749 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAD04_RS08625GCF_001685885#BAD04_RS08625
HKClassicCurrent focus
163 610-164 926 nt · Forward (+)
BAD04_RS08630GCF_001685885#BAD04_RS08630
RROmpR
165 045-165 749 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685705#BAC95_RS00815Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2093986
Simplified PFAM architecture for HKOC_2093986
PFAM domain coverage: 176 / 438 aa (40.2%)
1 aa438 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2093986
- Positioned domains: HisKA 180-244 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_001685705#BAC95_RS00815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001685885
AssemblyASM168588v1 · Contighaploid
Genome composition2 287 657 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key